pypi.org "vcf" keyword
View the packages on the pypi.org package registry that are tagged with the "vcf" keyword.
Top 1.8% on pypi.org
36 versions - Latest release: 9 months ago - 28 dependent packages - 1,731 dependent repositories - 626 thousand downloads last month - 14 stars on GitHub - 4 maintainers
vobject 0.9.9
A full-featured Python package for parsing and creating iCalendar and vCard files36 versions - Latest release: 9 months ago - 28 dependent packages - 1,731 dependent repositories - 626 thousand downloads last month - 14 stars on GitHub - 4 maintainers
igdtools 2.2
Tools for converting VCF to IGD files and processing them.1 version - Latest release: 3 months ago - 49 downloads last month - 17 stars on GitHub - 1 maintainer
helical 1.4.3
Helical Python SDK35 versions - Latest release: 9 days ago - 923 downloads last month - 148 stars on GitHub - 2 maintainers
cutevariant 0.4.5 💰
GUI to visualize and process variant data36 versions - Latest release: over 2 years ago - 1 dependent repositories - 79 downloads last month - 107 stars on GitHub - 2 maintainers
variant_integrity 0.0.4
Tool to check mendelian errors and estimate if father is father4 versions - Latest release: almost 9 years ago - 2 dependent repositories - 16 downloads last month - 1 stars on GitHub - 3 maintainers
vembrane 2.2.0
Filter VCF/BCF files with Python expressions.38 versions - Latest release: about 2 months ago - 1 dependent repositories - 51 downloads last month - 62 stars on GitHub - 3 maintainers
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.6 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 1,026 stars on GitHub - 1 maintainer
vcfx 1.0.3
Python bindings for the VCFX toolkit - comprehensive VCF manipulation and analysis2 versions - Latest release: 3 months ago - 10 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
27 versions - Latest release: over 1 year ago - 14 dependent packages - 37 dependent repositories - 8.11 thousand downloads last month - 78 stars on GitHub - 1 maintainer
vcfpy 0.13.8
Python 3 VCF library with good support for both reading and writing27 versions - Latest release: over 1 year ago - 14 dependent packages - 37 dependent repositories - 8.11 thousand downloads last month - 78 stars on GitHub - 1 maintainer
haplodynamics 0.4b1
A python library to develop genomic data simulators16 versions - Latest release: about 2 years ago - 21 downloads last month - 4 stars on GitHub - 1 maintainer
vcf2fasta 0.1.2
A package to convert VCF files to FASTA format.3 versions - Latest release: about 1 month ago - 70 downloads last month - 51 stars on GitHub - 1 maintainer
cmdbtools 1.1.3
cmdbtools: A command line tools for CMDB variant browser.13 versions - Latest release: about 3 years ago - 1 dependent repositories - 24 downloads last month - 23 stars on GitHub - 1 maintainer
divbrowse 1.1.0
A web application for interactive visualization and analysis of genotypic variant matrices8 versions - Latest release: over 2 years ago - 1 dependent repositories - 27 downloads last month - 20 stars on GitHub - 2 maintainers
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 16 downloads last month - 1,026 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
157 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 25.4 thousand downloads last month - 979 stars on GitHub - 2 maintainers
hail 0.2.135
Scalable library for exploring and analyzing genomic data.157 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 25.4 thousand downloads last month - 979 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
171 versions - Latest release: 4 days ago - 1 dependent package - 2 dependent repositories - 1.92 thousand downloads last month - 151 stars on GitHub - 4 maintainers
scout-browser 4.104.0
Clinical DNA variant visualizer and browser171 versions - Latest release: 4 days ago - 1 dependent package - 2 dependent repositories - 1.92 thousand downloads last month - 151 stars on GitHub - 4 maintainers
Top 8.7% on pypi.org
168 versions - Latest release: 5 months ago - 7 dependent repositories - 287 downloads last month - 67 stars on GitHub - 5 maintainers
genmod 3.10.1
Annotate genetic inheritance models in Variant Call Format (VCF) files168 versions - Latest release: 5 months ago - 7 dependent repositories - 287 downloads last month - 67 stars on GitHub - 5 maintainers
telegramcontract2vcard 1.0.2
make telegram contacts.html or result.json to vCard automatically3 versions - Latest release: about 2 years ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
easyvcf 1.0
Easily convert data in csv to vcf contacts!1 version - Latest release: almost 3 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
quicksync4linux 1.0 💰
Gigaset QuickSync for Linux1 version - Latest release: about 1 year ago - 18 downloads last month - 21 stars on GitHub - 1 maintainer
fuc 0.38.0 💰
Frequently used commands in bioinformatics39 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 1.47 thousand downloads last month - 57 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 6 dependent repositories - 3.9 thousand downloads last month - 109 stars on GitHub - 1 maintainer
snps 2.10.0
tools for reading, writing, merging, and remapping SNPs47 versions - Latest release: 6 months ago - 2 dependent packages - 6 dependent repositories - 3.9 thousand downloads last month - 109 stars on GitHub - 1 maintainer
vstol 0.4.1
Variant Standardization, Tabulation, and Operations Library1 version - Latest release: about 1 month ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
33 versions - Latest release: 5 months ago - 2 dependent repositories - 1.47 thousand downloads last month - 307 stars on GitHub - 1 maintainer
truvari 5.3.0
Structural variant comparison tool for VCFs33 versions - Latest release: 5 months ago - 2 dependent repositories - 1.47 thousand downloads last month - 307 stars on GitHub - 1 maintainer
vcf-creator 1.1.1
Generate vCard file from CSV7 versions - Latest release: about 4 years ago - 1 dependent repositories - 24 downloads last month - 8 stars on GitHub - 1 maintainer
vcf_parser 1.5.9
Parsing vcf files49 versions - Latest release: almost 9 years ago - 4 dependent repositories - 115 downloads last month - 46 stars on GitHub - 1 maintainer
genomicsdb 0.1.6
Python Bindings for querying GenomicsDB40 versions - Latest release: 6 months ago - 1 dependent repositories - 549 downloads last month - 1 stars on GitHub - 2 maintainers
sufam 0.4.2
So U Found A Mutation?6 versions - Latest release: over 9 years ago - 4 dependent repositories - 8 downloads last month - 7 stars on GitHub - 1 maintainer
tp53 0.13.0
Python tools for programmatically annotating VCFs with the Seshat TP53 database.11 versions - Latest release: 9 months ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
icgc-data-parser 0.2.2
Tools to facilitate the parsing of SSM data from the International Cancer Genome Consortium data ...5 versions - Latest release: about 7 years ago - 1 dependent repositories - 17 downloads last month - 6 stars on GitHub - 1 maintainer
vcfio 1.2.0
A simple and efficient VCF manipulation package.13 versions - Latest release: about 1 month ago - 1 dependent repositories - 642 downloads last month - 9 stars on GitHub - 1 maintainer
vcfzap 1.2.0
A lightning-fast VCF contact extractor to CSV, TXT, JSON, HTML, SQLite, or terminal preview3 versions - Latest release: about 1 month ago - 53 downloads last month - 0 stars on GitHub - 1 maintainer
vcf2maf-lite 0.1.1
VCF to MAF format converter2 versions - Latest release: about 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
vs-emr 0.2.0a2
VariantSpark AWS EMR Tool2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 4 downloads last month - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 4 years ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 1 maintainer
csvtovcf 0.3.0
A library for converting csv to .vcf file1 version - Latest release: almost 6 years ago - 11 downloads last month - 2 stars on GitHub - 1 maintainer
card-data-parsers 0.17.0
Parsing bank feed data files16 versions - Latest release: 9 months ago - 86 downloads last month - 2 stars on GitHub - 1 maintainer
variant-extractor 5.0.0
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files.11 versions - Latest release: 5 months ago - 1 dependent package - 153 downloads last month - 7 stars on GitHub - 1 maintainer
vcforge 0.1.8
Python library for working with VCF files17 versions - Latest release: 10 months ago - 47 downloads last month - 847 stars on GitHub - 1 maintainer
jk-vcard 0.2020.9.21.1
This python module parses (and produces) vCard data as provided in vcf files.2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 1 stars on GitHub - 1 maintainer
genomicspy 0.2.1
Tools for manipulating vcfs doing genomics work10 versions - Latest release: almost 2 years ago - 17 downloads last month - 1 maintainer
vicify 0.6
1 version - Latest release: about 3 years ago - 2 downloads last month - 0 stars on GitHub - 1 maintainerpygwasvcf 0.0.4
A package for reading GWAS summary statistics stored in VCF/BCF format1 version - Latest release: over 3 years ago - 1 dependent repositories - 11 downloads last month - 8 stars on GitHub - 1 maintainer
vcfped 1.3.1
Identification of trios and other close relationships in multisample VCF files8 versions - Latest release: over 8 years ago - 1 dependent repositories - 3 downloads last month - 13 stars on GitHub - 1 maintainer
mutalyzer-client 0.0.1
CLI for the Mutalyzer API.1 version - Latest release: almost 7 years ago - 1 dependent repositories - 6 downloads last month - 1 stars on GitHub - 2 maintainers
dcicpyvcf 3.1.0
Variant Call Format (VCF) parser for Python9 versions - Latest release: about 1 year ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 2 maintainers
array-as-vcf 1.1.0
Convert SNP array to VCF3 versions - Latest release: about 3 years ago - 54 downloads last month - 2 maintainers
metallaxis 0.9
A graphical python-based VCF viewer with optional annotation3 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 1 maintainer
vcardtools 0.1.1
Tools to split and merge vCard files.2 versions - Latest release: over 9 years ago - 2 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
variant-spark 0.5.2
VariantSpark Python API36 versions - Latest release: almost 3 years ago - 1 dependent repositories - 32 downloads last month - 146 stars on GitHub - 3 maintainers
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: about 2 years ago - 33 downloads last month - 1 maintainer
vdw 0.4.1
Models and loader for processing, storing, and querying genetic data5 versions - Latest release: almost 11 years ago - 3 dependent repositories - 37 downloads last month - 4 stars on GitHub - 1 maintainer
rimecard 0.1.3
Extract vcf vcard contacts to rime pinyin dictionary.4 versions - Latest release: 5 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
genoray 0.15.0 💰
Add your description here41 versions - Latest release: 15 days ago - 711 downloads last month - 395 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 5 years ago - 1 dependent repositories - 28 downloads last month - 319 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
95 versions - Latest release: about 1 year ago - 43 dependent packages - 99 dependent repositories - 82.6 thousand downloads last month - 403 stars on GitHub - 1 maintainer
cyvcf2 0.31.1 💰
fast vcf parsing with cython + htslib95 versions - Latest release: about 1 year ago - 43 dependent packages - 99 dependent repositories - 82.6 thousand downloads last month - 403 stars on GitHub - 1 maintainer
csv2vcf 0.2
Convert CSV to VCF1 version - Latest release: about 8 years ago - 1 dependent repositories - 85 downloads last month - 72 stars on GitHub - 1 maintainer
snpfc 1.0.0
Filter and compare SNPs from multiple VCF files1 version - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 1 maintainer
hmtnote 0.7.2
Human mitochondrial variants annotation using HmtVar.20 versions - Latest release: about 6 years ago - 1 dependent repositories - 171 downloads last month - 18 stars on GitHub - 1 maintainer
afplot 0.2.1
Plot allele frequencies in VCF files3 versions - Latest release: about 8 years ago - 1 dependent repositories - 46 downloads last month - 11 stars on GitHub - 1 maintainer
tabixpy 1.5.2
Tabix reader written 100% in Python5 versions - Latest release: about 5 years ago - 1 dependent repositories - 33 downloads last month - 8 stars on GitHub - 1 maintainer
cg-fluffy 4.0.0
NIPT analysis pipeline26 versions - Latest release: 4 months ago - 1 dependent repositories - 151 downloads last month - 3 stars on GitHub - 4 maintainers
contactpy 1.2.3 removed
Useful tools to work with Contacts in Python5 versions - Latest release: almost 5 years ago - 436 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
27 versions - Latest release: over 4 years ago - 7 dependent repositories - 675 downloads last month - 138 stars on GitHub - 1 maintainer
peddy 0.4.8 💰
pleasingly pythonic pedigree manipulation27 versions - Latest release: over 4 years ago - 7 dependent repositories - 675 downloads last month - 138 stars on GitHub - 1 maintainer
stranger 0.9.5
Annotate VCF files with STR variants with pathogenicity implications20 versions - Latest release: 3 months ago - 2 dependent repositories - 193 downloads last month - 32 stars on GitHub - 3 maintainers
vcfstats 0.7.0
Powerful statistics for VCF files16 versions - Latest release: about 2 months ago - 1 dependent repositories - 167 downloads last month - 70 stars on GitHub - 1 maintainer
vcftoolbox 1.5.1
Tools for manipulating and parsing vcf files20 versions - Latest release: over 9 years ago - 2 dependent packages - 9 dependent repositories - 670 downloads last month - 1 stars on GitHub - 1 maintainer
pypgatk 0.0.24
Python tools for proteogenomics21 versions - Latest release: over 1 year ago - 1 dependent repositories - 104 downloads last month - 13 stars on GitHub - 1 maintainer
vcf2networks 1.0.8
calculate Genotype Networks from VCF files18 versions - Latest release: almost 12 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
deeplotyper 2025.10.2a0
Tools for graph based and string based mapping and remapping genomic ↔ transcript ↔ aminoacid seq...2 versions - Latest release: 4 months ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
etiennevar 1.0.4
Outil en ligne de commande pour résumer et visualiser les fichiers VCF5 versions - Latest release: about 2 months ago - 1 maintainer
bio-wrangler 0.2
A bioinformatics data wrangling package for FASTA, FASTQ, VCF, and GFF files.2 versions - Latest release: 11 months ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
varify 0.8.0
Clinical DNA Sequencing Analysis and Data Discovery7 versions - Latest release: almost 11 years ago - 2 dependent repositories - 34 downloads last month - 24 stars on GitHub - 1 maintainer
vcfy 0.0.9
Generate VCF file with random variants from reference genome9 versions - Latest release: over 4 years ago - 1 dependent repositories - 42 downloads last month - 6 stars on GitHub - 1 maintainer
vcf2pandas 0.2.0
Package to convert a vcf into a pandas dataframe.5 versions - Latest release: 6 months ago - 94 downloads last month - 3 stars on GitHub - 1 maintainer
granite-suite 0.3.0
granite is a collection of software to call, filter and work with genomic variants.21 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 176 downloads last month - 6 stars on GitHub - 2 maintainers
cada-prio 0.7.0
Phenotype-based prioritization of variants with CADA9 versions - Latest release: about 1 year ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
virheat 0.7.5
virHEAT creates a heatmap from vcf files and maps positions on to a reference genome.16 versions - Latest release: 26 days ago - 36 downloads last month - 14 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
4 versions - Latest release: about 6 years ago - 3 dependent repositories - 123 downloads last month - 132 stars on GitHub - 3 maintainers
svtyper 0.7.1
Bayesian genotyper for structural variants4 versions - Latest release: about 6 years ago - 3 dependent repositories - 123 downloads last month - 132 stars on GitHub - 3 maintainers
eva-vcf-merge 0.0.8
EBI EVA - VCF merge library9 versions - Latest release: almost 2 years ago - 3 dependent repositories - 280 downloads last month - 0 stars on GitHub - 1 maintainer
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 4 years ago - 1 dependent repositories - 153 downloads last month - 131 stars on GitHub - 1 maintainer
seaviz 0.1
Play around with seaborn plots from a cli1 version - Latest release: over 6 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
howard-ann 0.12.1
HOWARD - Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery2 versions - Latest release: 9 months ago - 9 downloads last month - 10 stars on GitHub - 1 maintainer
vcf-batcher 0.2.1
Command-line tool to cut VCF (variant call files) into smaller batches, intended to be used for m...2 versions - Latest release: over 2 years ago - 53 downloads last month - 2 stars on GitHub - 1 maintainer
tbvcfreport 0.1.7
Parses SnpEff generated VCF and generates an HTML report.2 versions - Latest release: about 6 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 1 maintainer
vafator 2.2.2
Annotate a VCF file with AF, AD and DP from tumor and normal BAMs24 versions - Latest release: 3 months ago - 1 dependent repositories - 183 downloads last month - 9 stars on GitHub - 1 maintainer
vsnpdev 0.0.21
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Bruc...19 versions - Latest release: over 5 years ago - 1 dependent repositories - 40 downloads last month - 21 stars on GitHub - 1 maintainer
gdbigtools 1.1.6
GDBIGtools: A command line tools for GDBIG variant browser.3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 19 downloads last month - 6 stars on GitHub - 1 maintainer
vcf2fhir 0.1.1
Convert .vcf files to HL7 FHIR standard9 versions - Latest release: over 3 years ago - 1 dependent repositories - 77 downloads last month - 40 stars on GitHub - 4 maintainers
varfish-cli 0.7.0
Command line interface client for VarFish Server.24 versions - Latest release: 8 months ago - 4 dependent repositories - 339 downloads last month - 2 stars on GitHub - 1 maintainer
score_mip_variants 0.6.2
Annotate vcf variants with a rank score15 versions - Latest release: over 10 years ago - 2 dependent repositories - 16 downloads last month - 1 maintainer
vcf-generator 1.1.7
A simple VCF generator. Generate VCF files with random data.6 versions - Latest release: over 1 year ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
upd 0.2 removed
Simple software to call UPD regions from germline exome/wgs trios.1 version - Latest release: over 2 years ago - 1 maintainer
Related Keywords
bioinformatics
32
genomics
17
python
15
genetics
12
variants
12
variant
8
gwas
7
vcard
7
genome
7
vcf-files
6
fasta
5
snps
5
VCF
5
bam
5
dna
5
python3
4
contacts
4
variant-analysis
4
csv
4
ensembl
3
sam
3
snp
3
snv
3
parsing
3
cancer
3
api
3
hail
3
cli
3
bed
3
htslib
3
variant-filtration
3
sequence
3
software
3
visualization
3
str
3
contact
2
sv
2
maf
2
genetic
2
proteogenomics
2
variation
2
proteomics
2
cython
2
genotype
2
Genomics
2
mutation
2
variant-prioritization
2
varfish
2
harvest
2
database
2
genomics-data
2
gff3
2
genomics-api
2
trio
2
ngs
2
phonebook
2
convert
2
protein
2
variant-calling
2
biology
2
SNP
2
dna-sequences
2
parser
2
json
2
html
2
variant-annotations
2
rna
2
tuberculosis
2
cram
2
annotations
2
variant-spark
2
association-studies
2
random-forest
2
snpeff
2
fastq
2
wgs
2
gff
2
gtf
2
development
2
filter
2
ranking
2
annotation
2
genomes
1
genome-sequencing
1
genome-browser
1
genome-annotation
1
csv-parser
1
cancer-genomics
1
medical
1
comma-separated-values
1
contacts-app
1
contacts-book
1
contacts-manager
1
converter
1
email-template
1
moduland
1
upd
1
forest
1
random
1
vCard
1