Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
spack.io "genomics" keyword
Top 9.6% on spack.io
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-galaxy-objectstore 22.1.1
The Galaxy object store framework and default implementations.1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-goatools 0.7.11
Python scripts to find enrichment of GO terms1 version - Latest release: about 2 years ago - 580 stars on GitHub - 1 maintainer
Top 7.4% on spack.io
1 version - Latest release: over 1 year ago - 2 dependent packages - 1,077 stars on GitHub - 1 maintainer
py-galaxy-tool-util 22.1.5
The Galaxy tool utilities.1 version - Latest release: over 1 year ago - 2 dependent packages - 1,077 stars on GitHub - 1 maintainer
Top 5.1% on spack.io
1 version - Latest release: over 1 year ago - 5 dependent packages - 1,077 stars on GitHub - 1 maintainer
py-galaxy-util 22.1.2
Galaxy Generic Utilities1 version - Latest release: over 1 year ago - 5 dependent packages - 1,077 stars on GitHub - 1 maintainer
Top 9.6% on spack.io
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-galaxy-containers 22.1.1
The Galaxy containers module - interfaces for modeling and interacting with container backends (d...1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-phanotate 1.5.0
PHANOTATE is a tool to annotate phage genomes. It uses the assumption that non-coding bases in a ...1 version - Latest release: over 1 year ago - 1 dependent package - 51 stars on GitHub - 1 maintainer
fq 0.10.0
fq is a library to generate and validate FASTQ file pairs. fq provides subcommands for filtering,...1 version - Latest release: 8 months ago - 50 stars on GitHub - 1 maintainer
py-ncbi-genome-download 0.3.1
Scripts to download genomes from the NCBI FTP servers1 version - Latest release: over 1 year ago - 730 stars on GitHub - 1 maintainer
py-ipyrad 0.9.93
An interactive toolkit for assembly and analysis of restriction-site associated genomic data sets...5 versions - Latest release: 2 months ago - 63 stars on GitHub - 1 maintainer
py-pyfastaq 3.17.0
Manipulate FASTA and FASTQ files.7 versions - Latest release: 3 months ago - 1 dependent package - 64 stars on GitHub - 1 maintainer
Top 9.6% on spack.io
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-galaxy-job-metrics 22.1.1
The Galaxy job metrics framework and default plugins.1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
dorado
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.Latest release: 1 day ago - 284 stars on GitHub - 1 maintainer
Top 9.8% on spack.io
6 versions - Latest release: 5 months ago - 1 dependent package - 1,391 stars on GitHub - 1 maintainer
minimap2 2.17
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a la...6 versions - Latest release: 5 months ago - 1 dependent package - 1,391 stars on GitHub - 1 maintainer
py-cyvcf2 0.11.7 💰
fast vcf parsing with cython + htslib1 version - Latest release: about 2 years ago - 2 dependent packages - 321 stars on GitHub - 1 maintainer
smof 2.13.1
Explore and analyze biological sequence data1 version - Latest release: about 2 years ago - 12 stars on GitHub
roary 3.13.0
Rapid large-scale prokaryote pan genome analysis1 version - Latest release: over 1 year ago - 254 stars on GitHub
megahit 1.1.4
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succi...2 versions - Latest release: about 2 years ago - 448 stars on GitHub
fermikit 2017-11-7
De novo assembly based variant calling pipeline for Illumina short reads1 version - Latest release: about 2 years ago - 105 stars on GitHub
fermi 1.1
A WGS de novo assembler based on the FMD-index for large genomes.1 version - Latest release: about 2 years ago - 74 stars on GitHub
wgsim 2011.10.17
Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simula...1 version - Latest release: about 2 years ago - 228 stars on GitHub
Top 3.7% on spack.io
4 versions - Latest release: about 2 years ago - 14 dependent packages - 1,260 stars on GitHub
bwa 0.7.17
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.4 versions - Latest release: about 2 years ago - 14 dependent packages - 1,260 stars on GitHub
redundans 0.13c
Redundans pipeline assists an assembly of heterozygous genomes.2 versions - Latest release: about 2 years ago - 99 stars on GitHub
psmc 2016-1-21
mplementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model1 version - Latest release: about 2 years ago - 125 stars on GitHub
Related Keywords
bioinformatics
19
sequencing
7
pipeline
6
workflow-engine
5
workflow
5
usegalaxy
5
science
5
ngs
5
hacktoberfest
5
dna
5
next-generation-sequencing
3
genome-assembly
2
biology
2
denovo-assembly
2
python
2
assembly
2
fasta
2
global-health
2
infectious-diseases
2
pathogen
2
research
2
sequence-alignment
2
sequence
1
vcf
1
htslib
1
sequence-analysis
1
cython
1
bioinformatics-pipeline
1
bioinfomatics
1
data-structures
1
metagenomics
1
succinct
1
variant-calling
1
fm-index
1
assembled-contigs
1
closing
1
contigs
1
docker-image
1
gap
1
heterozygous
1
mate-pairs
1
paired-end
1
polymorphic
1
scaffolding
1
population-genetics
1
fdr
1
fdr-benjamini
1
fisher-tests
1
gene-ontology
1
gene-set-enrichment
1
goslim-terms
1
holm-sidak
1
sidak
1
annotate-phage-genomes
1
annotation
1
phage
1
fastq
1
fastq-files
1
illumina
1
rust
1
command-line
1
download-genomes
1
genbank
1
ncbi
1
phylogeny
1
rad-seq
1
basecalling
1
libtorch
1
nanopore
1
spliced-alignment
1