Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "variant" keyword
gepyto 0.10.1
Utilities and tools to interface with genomic databases and to facilitate common bioinformatics t...3 versions - Latest release: over 8 years ago - 3 dependent repositories - 161 downloads last month - 7 stars on GitHub - 1 maintainer
variant 0.0.87
python utils for genomic variant (WIP)88 versions - Latest release: 5 months ago - 4 dependent repositories - 528 downloads last month - 0 stars on GitHub - 1 maintainer
prody-rhapsody 0.9.8
Python program, based on ProDy, for pathogenicity prediction of human missense variants.6 versions - Latest release: about 4 years ago - 1 dependent repositories - 34 downloads last month - 7 stars on GitHub - 1 maintainer
mutalyzer 3.0.7
Mutalyzer HGVS variant description tools.9 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 52 downloads last month - 29 stars on GitHub - 1 maintainer
vcf2networks 1.0.8
calculate Genotype Networks from VCF files18 versions - Latest release: over 10 years ago - 2 dependent repositories - 191 downloads last month - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 5 years ago - 1 dependent repositories - 57 downloads last month - 25 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
11 versions - Latest release: 7 months ago - 6 dependent packages - 74 dependent repositories - 81.1 thousand downloads last month - 14 stars on GitHub - 2 maintainers
biothings-client 0.3.1
Python Client for BioThings API services.11 versions - Latest release: 7 months ago - 6 dependent packages - 74 dependent repositories - 81.1 thousand downloads last month - 14 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
75 versions - Latest release: 25 days ago - 1 dependent repositories - 538 downloads last month - 127 stars on GitHub - 3 maintainers
pvactools 4.2.0
A cancer immunotherapy tools suite75 versions - Latest release: 25 days ago - 1 dependent repositories - 538 downloads last month - 127 stars on GitHub - 3 maintainers
oakvar 2.9.127 💰
A genomic variant analysis platform279 versions - Latest release: 16 days ago - 1 dependent repositories - 1.03 thousand downloads last month - 23 stars on GitHub - 1 maintainer
mucor 1.51
Genomic Variant Aggregation and Mutation Correlation2 versions - Latest release: over 8 years ago - 2 dependent repositories - 8 downloads last month - 12 stars on GitHub - 1 maintainer
variant-extractor 4.0.6
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files6 versions - Latest release: about 1 year ago - 1 dependent package - 27 downloads last month - 3 stars on GitHub - 1 maintainer
vatools 5.1.1
A tool for annotating VCF files with expression and readcount data9 versions - Latest release: 4 months ago - 1 dependent repositories - 170 downloads last month - 24 stars on GitHub - 3 maintainers
Top 9.3% on pypi.org
7 versions - Latest release: over 5 years ago - 1 dependent package - 17 dependent repositories - 213 downloads last month - 21 stars on GitHub - 2 maintainers
myvariant 1.0.0
Python Client for MyVariant.Info services.7 versions - Latest release: over 5 years ago - 1 dependent package - 17 dependent repositories - 213 downloads last month - 21 stars on GitHub - 2 maintainers
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: over 6 years ago - 2 dependent repositories - 52 downloads last month - 60 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
28 versions - Latest release: 4 months ago - 1 dependent repositories - 597 downloads last month - 324 stars on GitHub - 1 maintainer
igv-reports 1.12.0
Creates self-contained html pages for visual variant review with IGV (igv.js).28 versions - Latest release: 4 months ago - 1 dependent repositories - 597 downloads last month - 324 stars on GitHub - 1 maintainer
dysgu 1.6.3
Structural variant calling28 versions - Latest release: 2 months ago - 1 dependent repositories - 363 downloads last month - 85 stars on GitHub - 1 maintainer
charger 0.5.2
Characterization of Germline variants4 versions - Latest release: over 6 years ago - 1 dependent repositories - 57 downloads last month - 92 stars on GitHub - 2 maintainers
ngs-analysis 0.0.6
Analyze deep sequencing of complex libraries6 versions - Latest release: 4 months ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
vcfio 1.1.9
A simple and efficient VCF manipulation package.9 versions - Latest release: 4 months ago - 1 dependent repositories - 1.05 thousand downloads last month - 6 stars on GitHub - 1 maintainer
myvariant-api 1.0
A simple API wrapper for the MyVariant.info API.1 version - Latest release: almost 9 years ago - 2 dependent repositories - 6 downloads last month - 1 maintainer
seq-dove 0.4.4
Set of tools for downstream vcf analysis24 versions - Latest release: over 3 years ago - 1 dependent repositories - 131 downloads last month - 1 maintainer
mython 0.0.2
The Mython extensible variant of the Python programming language.1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
seq-pigeon 0.4.3
Pipeline tool for NGS data17 versions - Latest release: over 3 years ago - 1 dependent repositories - 35 downloads last month - 942 stars on GitHub - 1 maintainer
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment3 versions - Latest release: about 1 month ago - 154 downloads last month - 3 stars on GitHub - 1 maintainer
ensembl-variant-lookup 0.1.2
a user-friendly interface for searching individual variants, batch queries, and exploring gene re...3 versions - Latest release: 5 months ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
pytest-variant 1.1.0
Variant support for Pytest2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
mitywgs 1.0.0 💰
A sensitive Mitochondrial variant detection pipeline from WGS data10 versions - Latest release: 4 months ago - 1 dependent repositories - 107 downloads last month - 34 stars on GitHub - 3 maintainers
variant-spark 0.5.2
VariantSpark Python API36 versions - Latest release: over 1 year ago - 1 dependent repositories - 263 downloads last month - 138 stars on GitHub - 3 maintainers
km-walk 2.2.1
A software for RNA-seq investigation using k-mer decomposition3 versions - Latest release: 10 months ago - 1 dependent repositories - 20 downloads last month - 10 stars on GitHub - 1 maintainer
mutalyzer-hgvs-parser 0.3.5
Mutalyzer HGVS variant description parser.17 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 344 downloads last month - 0 stars on GitHub - 1 maintainer
hmmcnv 1.1.5
Python package for Copy-Number Variation calling9 versions - Latest release: about 2 months ago - 1 dependent repositories - 158 downloads last month - 2 stars on GitHub - 1 maintainer
exoclasma-note 0.9.0
Exo-C Data Quality Check, Mapping, and Variant Calling, part of ExoClasma Suite1 version - Latest release: over 1 year ago - 10 downloads last month - 0 stars on GitHub - 2 maintainers
exoclasma-pipe 0.9.1
Exo-C Data Quality Check, Mapping, and Variant Calling, part of ExoClasma Suite2 versions - Latest release: over 1 year ago - 12 downloads last month - 0 stars on GitHub - 2 maintainers
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 3 years ago - 1 dependent repositories - 202 downloads last month - 117 stars on GitHub - 1 maintainer
genomicsdb 0.0.9.13
Experimental Python Bindings for querying GenomicsDB18 versions - Latest release: 20 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 1 stars on GitHub - 3 maintainers
sumtype 0.10.0
A namedtuple-style library for defining immutable sum types in Python.8 versions - Latest release: over 5 years ago - 1 dependent repositories - 26 downloads last month - 27 stars on GitHub - 1 maintainer
pvacseq-client 0.0.2
Web Front-End for pVAC-Seq3 versions - Latest release: about 7 years ago - 1 dependent package - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 3 maintainers
picus 0.0.5
Pointed Interpretation of Clinical Variant Significance5 versions - Latest release: over 3 years ago - 1 dependent repositories - 32 downloads last month - 0 stars on GitHub - 1 maintainer
mutalyzer-mutator 0.2.0
Mutalyzer sequence mutator.5 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 115 downloads last month - 0 stars on GitHub - 1 maintainer
deepsvr 0.0.1.post1
Automated Somatic Variant Refinement by Deep Learning1 version - Latest release: about 6 years ago - 1 dependent repositories - 11 downloads last month - 49 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
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genomics
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