Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "vcf" keyword
telegramcontract2vcard 1.0.2
make telegram contacts.html or result.json to vCard automatically3 versions - Latest release: 10 months ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
snpfc 1.0.0
Filter and compare SNPs from multiple VCF files1 version - Latest release: about 5 years ago - 1 dependent repositories - 10 downloads last month - 4 stars on GitHub - 1 maintainer
vcf-generator 1.1.7
A simple VCF generator. Generate VCF files with random data.6 versions - Latest release: 2 months ago - 54 downloads last month - 0 stars on GitHub - 1 maintainer
vcfped 1.3.1
Identification of trios and other close relationships in multisample VCF files8 versions - Latest release: about 7 years ago - 1 dependent repositories - 14 downloads last month - 13 stars on GitHub - 1 maintainer
sufam 0.4.2
So U Found A Mutation?6 versions - Latest release: over 8 years ago - 4 dependent repositories - 37 downloads last month - 7 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
44 versions - Latest release: about 1 month ago - 2 dependent packages - 6 dependent repositories - 2.03 thousand downloads last month - 91 stars on GitHub - 1 maintainer
snps 2.8.1
tools for reading, writing, merging, and remapping SNPs44 versions - Latest release: about 1 month ago - 2 dependent packages - 6 dependent repositories - 2.03 thousand downloads last month - 91 stars on GitHub - 1 maintainer
dcicpyvcf 3.0.0
Variant Call Format (VCF) parser for Python6 versions - Latest release: 8 months ago - 1 dependent repositories - 50 downloads last month - 0 stars on GitHub - 2 maintainers
tbvcfreport 0.1.7
Parses SnpEff generated VCF and generates an HTML report.2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 1 maintainer
haplodynamics 0.4b1
A python library to develop genomic data simulators16 versions - Latest release: 10 months ago - 29 downloads last month - 2 stars on GitHub - 1 maintainer
granite-suite 0.2.0
granite is a collection of software to call, filter and work with genomic variants.16 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 88 downloads last month - 5 stars on GitHub - 2 maintainers
score_mip_variants 0.6.2
Annotate vcf variants with a rank score15 versions - Latest release: over 9 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 407 downloads last month - 45 stars on GitHub - 1 maintainer
metallaxis 0.9
A graphical python-based VCF viewer with optional annotation3 versions - Latest release: about 5 years ago - 1 dependent repositories - 32 downloads last month - 6 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
151 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 19.4 thousand downloads last month - 925 stars on GitHub - 2 maintainers
hail 0.2.130
Scalable library for exploring and analyzing genomic data.151 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 19.4 thousand downloads last month - 925 stars on GitHub - 2 maintainers
pygwasvcf 0.0.4
A package for reading GWAS summary statistics stored in VCF/BCF format1 version - Latest release: about 2 years ago - 1 dependent repositories - 18 downloads last month - 6 stars on GitHub - 1 maintainer
vcf-creator 1.1.1
Generate vCard file from CSV7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 44 downloads last month - 6 stars on GitHub - 1 maintainer
vcfio 1.1.9
A simple and efficient VCF manipulation package.10 versions - Latest release: 4 months ago - 1 dependent repositories - 1.05 thousand downloads last month - 6 stars on GitHub - 1 maintainer
gdbigtools 1.1.6
GDBIGtools: A command line tools for GDBIG variant browser.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 1 maintainer
array-as-vcf 1.1.0
Convert SNP array to VCF3 versions - Latest release: almost 2 years ago - 47 downloads last month - 2 maintainers
Top 4.7% on pypi.org
27 versions - Latest release: 5 months ago - 14 dependent packages - 37 dependent repositories - 4.9 thousand downloads last month - 78 stars on GitHub - 1 maintainer
vcfpy 0.13.8
Python 3 VCF library with good support for both reading and writing27 versions - Latest release: 5 months ago - 14 dependent packages - 37 dependent repositories - 4.9 thousand downloads last month - 78 stars on GitHub - 1 maintainer
card-data-parsers 0.15.0
Parsing bank feed data files15 versions - Latest release: 10 months ago - 103 downloads last month - 2 stars on GitHub - 1 maintainer
contactpy 1.2.3
Useful tools to work with Contacts in Python5 versions - Latest release: over 3 years ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
27 versions - Latest release: about 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
peddy 0.4.8 💰
pleasingly pythonic pedigree manipulation27 versions - Latest release: about 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
csvtovcf 0.3.0
A library for converting csv to .vcf file1 version - Latest release: over 4 years ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 4 years ago - 1 dependent repositories - 70 downloads last month - 307 stars on GitHub - 2 maintainers
vcardtools 0.1.1
Tools to split and merge vCard files.2 versions - Latest release: about 8 years ago - 2 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.8% on pypi.org
34 versions - Latest release: 3 months ago - 28 dependent packages - 1,731 dependent repositories - 185 thousand downloads last month - 14 stars on GitHub - 4 maintainers
vobject 0.9.7
A full-featured Python package for parsing and creating iCalendar and vCard files34 versions - Latest release: 3 months ago - 28 dependent packages - 1,731 dependent repositories - 185 thousand downloads last month - 14 stars on GitHub - 4 maintainers
vcf2networks 1.0.8
calculate Genotype Networks from VCF files18 versions - Latest release: over 10 years ago - 2 dependent repositories - 191 downloads last month - 1 maintainer
varify 0.8.0
Clinical DNA Sequencing Analysis and Data Discovery7 versions - Latest release: over 9 years ago - 2 dependent repositories - 144 downloads last month - 24 stars on GitHub - 1 maintainer
vcf2fhir 0.1.1
Convert .vcf files to HL7 FHIR standard9 versions - Latest release: about 2 years ago - 1 dependent repositories - 91 downloads last month - 36 stars on GitHub - 4 maintainers
vcf_parser 1.5.9
Parsing vcf files49 versions - Latest release: over 7 years ago - 4 dependent repositories - 1.12 thousand downloads last month - 42 stars on GitHub - 1 maintainer
eva-vcf-merge 0.0.8
EBI EVA - VCF merge library9 versions - Latest release: 7 months ago - 3 dependent repositories - 121 downloads last month - 0 stars on GitHub - 1 maintainer
cutevariant 0.4.5 💰
GUI to visualize and process variant data36 versions - Latest release: about 1 year ago - 1 dependent repositories - 152 downloads last month - 89 stars on GitHub - 2 maintainers
vs-emr 0.2.0a2
VariantSpark AWS EMR Tool2 versions - Latest release: over 5 years ago - 1 dependent repositories - 27 downloads last month - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 3 years ago - 1 dependent repositories - 218 downloads last month - 1 stars on GitHub - 1 maintainer
variant-extractor 4.0.6
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files6 versions - Latest release: over 1 year ago - 1 dependent package - 27 downloads last month - 3 stars on GitHub - 1 maintainer
icgc-data-parser 0.2.2
Tools to facilitate the parsing of SSM data from the International Cancer Genome Consortium data ...5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 6 stars on GitHub - 1 maintainer
vembrane 1.0.5
Filter VCF/BCF files with Python expressions.33 versions - Latest release: 3 months ago - 1 dependent repositories - 175 downloads last month - 56 stars on GitHub - 3 maintainers
stranger 0.8.1
Annotate VCF files with str variants15 versions - Latest release: over 2 years ago - 2 dependent repositories - 89 downloads last month - 27 stars on GitHub - 3 maintainers
vcfstats 0.6.0
Powerful statistics for VCF files15 versions - Latest release: 9 months ago - 1 dependent repositories - 277 downloads last month - 54 stars on GitHub - 1 maintainer
vmware-cloud-foundation-health-monitoring 1.1.0
Python Module for VMware Cloud Foundation Health Monitoring in VMware Aria Operations10 versions - Latest release: about 1 year ago - 201 downloads last month - 21 stars on GitHub - 2 maintainers
pypgatk 0.0.24
Python tools for proteogenomics21 versions - Latest release: about 2 months ago - 1 dependent repositories - 108 downloads last month - 9 stars on GitHub - 1 maintainer
varfish-cli 0.6.3
Command line interface client for VarFish Server.22 versions - Latest release: 5 months ago - 4 dependent repositories - 288 downloads last month - 2 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 11 months ago - 48 downloads last month - 1 maintainer
Top 2.2% on pypi.org
94 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 86.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
cyvcf2 0.30.28 💰
fast vcf parsing with cython + htslib94 versions - Latest release: 4 months ago - 43 dependent packages - 99 dependent repositories - 86.7 thousand downloads last month - 357 stars on GitHub - 1 maintainer
variant_integrity 0.0.4
Tool to check mendelian errors and estimate if father is father4 versions - Latest release: over 7 years ago - 2 dependent repositories - 24 downloads last month - 1 stars on GitHub - 3 maintainers
easyvcf 1.0
Easily convert data in csv to vcf contacts!1 version - Latest release: over 1 year ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
vcf-batcher 0.2.1
Command-line tool to cut VCF (variant call files) into smaller batches, intended to be used for m...2 versions - Latest release: about 1 year ago - 55 downloads last month - 2 stars on GitHub - 1 maintainer
vafator 2.2.0
Annotate a VCF file with AF, AD and DP from tumor and normal BAMs23 versions - Latest release: over 1 year ago - 1 dependent repositories - 183 downloads last month - 8 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
164 versions - Latest release: 6 months ago - 7 dependent repositories - 609 downloads last month - 67 stars on GitHub - 5 maintainers
genmod 3.8.2
Annotate genetic inheritance models in variant files164 versions - Latest release: 6 months ago - 7 dependent repositories - 609 downloads last month - 67 stars on GitHub - 5 maintainers
Top 7.8% on pypi.org
4 versions - Latest release: almost 5 years ago - 3 dependent repositories - 276 downloads last month - 116 stars on GitHub - 3 maintainers
svtyper 0.7.1
Bayesian genotyper for structural variants4 versions - Latest release: almost 5 years ago - 3 dependent repositories - 276 downloads last month - 116 stars on GitHub - 3 maintainers
vcftoolbox 1.5.1
Tools for manipulating and parsing vcf files20 versions - Latest release: about 8 years ago - 2 dependent packages - 9 dependent repositories - 254 downloads last month - 1 stars on GitHub - 1 maintainer
loqusdb 2.7.4
Store observations of vcf variants in a mongodb33 versions - Latest release: 3 months ago - 3 dependent packages - 3 dependent repositories - 378 downloads last month - 8 stars on GitHub - 4 maintainers
Top 8.5% on pypi.org
26 versions - Latest release: 2 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
truvari 4.2.2
Structural variant comparison tool for VCFs26 versions - Latest release: 2 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
vdw 0.4.1
Models and loader for processing, storing, and querying genetic data5 versions - Latest release: over 9 years ago - 3 dependent repositories - 51 downloads last month - 4 stars on GitHub - 1 maintainer
divbrowse 1.1.0
A web application for interactive visualization and analysis of genotypic variant matrices8 versions - Latest release: about 1 year ago - 1 dependent repositories - 46 downloads last month - 15 stars on GitHub - 2 maintainers
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 47 downloads last month - 925 stars on GitHub - 2 maintainers
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.6 versions - Latest release: about 2 years ago - 1 dependent repositories - 36 downloads last month - 925 stars on GitHub - 2 maintainers
genomicspy 0.2.1
Tools for manipulating vcfs doing genomics work10 versions - Latest release: 7 months ago - 72 downloads last month - 1 maintainer
mutalyzer-client 0.0.1
CLI for the Mutalyzer API.1 version - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 1 stars on GitHub - 2 maintainers
hmtnote 0.7.2
Human mitochondrial variants annotation using HmtVar.20 versions - Latest release: almost 5 years ago - 1 dependent repositories - 189 downloads last month - 16 stars on GitHub - 1 maintainer
cada-prio 0.6.1
Phenotype-based prioritization of variants with CADA8 versions - Latest release: 7 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
variant-spark 0.5.2
VariantSpark Python API36 versions - Latest release: almost 2 years ago - 1 dependent repositories - 263 downloads last month - 138 stars on GitHub - 3 maintainers
vcf2pandas 0.1.0
Package to convert a vcf into a pandas dataframe.2 versions - Latest release: 9 months ago - 58 downloads last month - 1 stars on GitHub - 1 maintainer
crunchy 1.0.3
Compress fastq with spring9 versions - Latest release: over 1 year ago - 1 dependent repositories - 102 downloads last month - 1 stars on GitHub - 3 maintainers
cmdbtools 1.1.3
cmdbtools: A command line tools for CMDB variant browser.13 versions - Latest release: almost 2 years ago - 1 dependent repositories - 76 downloads last month - 23 stars on GitHub - 1 maintainer
upd 0.2 removed
Simple software to call UPD regions from germline exome/wgs trios.1 version - Latest release: about 1 year ago - 1 maintainer
vicify 0.6
1 version - Latest release: almost 2 years ago - 7 downloads last month - 0 stars on GitHub - 1 maintainervsnpdev 0.0.21
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Bruc...19 versions - Latest release: over 4 years ago - 1 dependent repositories - 95 downloads last month - 18 stars on GitHub - 1 maintainer
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 3 years ago - 1 dependent repositories - 202 downloads last month - 117 stars on GitHub - 1 maintainer
genomicsdb 0.0.9.13
Experimental Python Bindings for querying GenomicsDB18 versions - Latest release: 27 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 1 stars on GitHub - 3 maintainers
tabixpy 1.5.2
Tabix reader written 100% in Python5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 50 downloads last month - 7 stars on GitHub - 1 maintainer
seaviz 0.1
Play around with seaborn plots from a cli1 version - Latest release: over 5 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
jk-vcard 0.2020.9.21.1
This python module parses (and produces) vCard data as provided in vcf files.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 1 stars on GitHub - 1 maintainer
csv2vcf 0.2
Convert CSV to VCF1 version - Latest release: almost 7 years ago - 1 dependent repositories - 30 downloads last month - 70 stars on GitHub - 1 maintainer
cg-fluffy 3.2.0
NIPT analysis pipeline25 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 3 stars on GitHub - 4 maintainers
afplot 0.2.1
Plot allele frequencies in VCF files3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 60 downloads last month - 11 stars on GitHub - 1 maintainer
vcfy 0.0.9
Generate VCF file with random variants from reference genome9 versions - Latest release: about 3 years ago - 1 dependent repositories - 109 downloads last month - 6 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
25
python
14
genomics
14
variants
12
genetics
12
genome
7
gwas
7
variant
6
vcard
6
vcf-files
5
VCF
4
python3
4
contacts
4
snps
4
bam
4
visualization
3
ensembl
3
sequence
3
hail
3
software
3
csv
3
dna
3
fasta
3
api
3
bed
3
parsing
3
variant-filtration
3
association-studies
2
random-forest
2
Genomics
2
harvest
2
filter
2
snp
2
sam
2
compression
2
gtf
2
annotations
2
parser
2
genomics-data
2
varfish
2
variant-prioritization
2
genotype
2
snv
2
cli
2
database
2
genomics-api
2
variant-analysis
2
SNP
2
gff3
2
convert
2
variation
2
str
2
tuberculosis
2
proteogenomics
2
proteomics
2
variant-spark
2
trio
2
variant-annotations
2
thkü
1
ieee
1
easyvcf
1
dogukan
1
meral
1
batch
1
batching
1
variant_call_file
1
annotation
1
inheritance
1
annotation-tool
1
benchmarking
1
data-science
1
sequencing
1
structural-variation
1
sv-merging
1
telegram
1
health
1
gui
1
pyside2
1
variant-call-format
1
biopython
1
synonymous
1
indel
1
sv
1
variant-calling
1
data
1
mutations
1
icgc
1
perl
1
filter-expression
1
vcf-filtering
1
vcfstats
1
powershell
1
terraform
1
vmware
1
vmware-cloud-foundation
1
vmware-validated-solutions
1
vvs
1
vvs-hrm
1
mass-spectrometry
1
proteogenomics-analysis-toolkit
1