Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "3d-genome" keyword
Top 7.0% on pypi.org
11 versions - Latest release: 22 days ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
pairtools 1.1.0
CLI tools to process mapped Hi-C data11 versions - Latest release: 22 days ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
Top 2.1% on pypi.org
45 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.6 thousand downloads last month - 189 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.45 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.6 thousand downloads last month - 189 stars on GitHub - 2 maintainers
pairliftover 0.2.1
Convert genomic coordinates of contact pairs from one assembly to another.7 versions - Latest release: over 1 year ago - 1 dependent repositories - 55 downloads last month - 56 stars on GitHub - 1 maintainer
firecaller 1.0.0
Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data1 version - Latest release: about 4 years ago - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 1 maintainer
hiclift 1.0
Convert genomic coordinates of contact pairs from one assembly to another.1 version - Latest release: over 1 year ago - 26 downloads last month - 59 stars on GitHub - 1 maintainer
diffdomain-py3 0.2.2
DiffDomain can test the significant difference of TADs on chromatin.15 versions - Latest release: 6 months ago - 91 downloads last month - 10 stars on GitHub - 1 maintainer
daric 0.2.20
DARIC, a computational framework to find quantitatively differential compartments from Hi-C data15 versions - Latest release: 4 months ago - 1 dependent repositories - 61 downloads last month - 384 stars on GitHub - 1 maintainer
cloops2 0.0.5
Loop-calling and peak-calling for sequencing-based interaction data, including related analysis u...3 versions - Latest release: 10 months ago - 1 dependent repositories - 49 downloads last month - 35 stars on GitHub - 1 maintainer
Related Keywords
hi-c
7
genomics
4
Hi-C
4
python
4
bioinformatics
3
ngs
3
4DN
2
pairs
2
liftover
2
cooler
2
contact
2
file-formatter
1
visualization
1
3d-genome-visualization
1
bioinformatics-tool
1
chia-pet
1
chromatin-interaction
1
cloops2
1
clustering
1
differential-enriched-loops
1
domains
1
un-limited-resolution
1
trac-looping
1
hichip
1
stripes
1
loops
1
montage
1
next-generation-sequencing
1
peaks
1
rehoboam
1
pairs-file
1
format
1
hdf5
1
matrix
1
sparse
1
chromatin
1
contact-matrix
1
file-format
1
genomic-data-analysis
1
hic
1
differential
1
r
1
tads
1
3d-genome-browser
1
peak-calling
1
loop-calling
1
Hi-Trac
1
interaction
1