Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "chromatin" keyword
Top 2.1% on pypi.org
46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 3.93 thousand downloads last month - 191 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 3.93 thousand downloads last month - 191 stars on GitHub - 2 maintainers
peakachu 1.1.3
A supervised learning framework for chromatin loop detection in genome-wide contact maps.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 108 downloads last month - 48 stars on GitHub - 2 maintainers
multivelo 0.1.3
Multi-omic extension of single-cell RNA velocity4 versions - Latest release: 12 months ago - 1 dependent repositories - 145 downloads last month - 98 stars on GitHub - 2 maintainers
corigami-demo 0.0.1
C.Origami: cell type-specific chromatin structure prediction.1 version - Latest release: over 1 year ago - 11 downloads last month - 51 stars on GitHub - 1 maintainer
corigami 0.0.1
C.Origami: cell type-specific chromatin structure prediction.1 version - Latest release: over 1 year ago - 26 downloads last month - 51 stars on GitHub - 2 maintainers
hicpeaks 0.3.7
A Python implementation for BH-FDR and HiCCUPS14 versions - Latest release: 10 months ago - 1 dependent repositories - 118 downloads last month - 38 stars on GitHub - 1 maintainer
tadlib 0.4.5
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains21 versions - Latest release: over 1 year ago - 1 dependent repositories - 225 downloads last month - 39 stars on GitHub - 2 maintainers
stripecaller 0.1.0
Automated Stripe Identification from contact matrix.1 version - Latest release: about 4 years ago - 1 dependent repositories - 29 downloads last month - 16 stars on GitHub - 1 maintainer
spiker 1.0.5
spiker (Analysis workflow for ChIP-seq data with spike-in)3 versions - Latest release: over 2 years ago - 1 dependent repositories - 21 downloads last month - 1 maintainer
gamtools 2.0.0
A package containing some utilities for analyzing GAM data.4 versions - Latest release: over 1 year ago - 1 dependent repositories - 43 downloads last month - 9 stars on GitHub - 1 maintainer
epilogos 0.1.2
Information-theoretic navigation of multi-tissue functional genomic annotations5 versions - Latest release: 11 months ago - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
dastk 1.0.1
Differential ATAC-seq toolkit14 versions - Latest release: over 1 year ago - 1 dependent repositories - 223 downloads last month - 28 stars on GitHub - 2 maintainers
chess-hic 0.3.8
Quantitative comparison and automatic feature extraction for chromatin contact data.10 versions - Latest release: 11 months ago - 3 dependent repositories - 74 downloads last month - 26 stars on GitHub - 1 maintainer
chame 0.0.1.dev0
Chromatin accessibility module1 version - Latest release: almost 2 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
footprint-tools 1.3.7
Genomic footprint detection12 versions - Latest release: about 2 years ago - 1 dependent repositories - 64 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
hi-c
7
genomics
6
bioinformatics
5
cooler
5
Hi-C
4
contact-matrix
4
python
4
contact
3
epigenetics
2
cell type-specific
2
prediction
2
deep learning
2
computational-biology
2
convolutional-neural-network
2
deep-learning
2
transformer
2
interaction
2
genome
2
high-throughput-sequencing
1
molecular-biology
1
python2
1
python3
1
chromhmm
1
compbio
1
peak calling
1
spikein
1
spike-in
1
ChIPseq
1
ChIP-seq
1
stripes
1
dnase
1
transcription factors
1
genomic footprints
1
scverse
1
scatac-seq
1
ranges
1
multiome
1
atac-seq
1
structural-similarity
1
comparative-genomics
1
chromatin-organisation
1
TF
1
transcription_factor
1
motif
1
ATAC-seq
1
epigenomics
1
dataviz
1
format
1
hdf5
1
matrix
1
sparse
1
3d-genome
1
file-format
1
ngs
1
loop
1
peak
1
RNA velocity
1
single-cell
1
transcriptomics
1
epigenetic
1
epigenomic
1
gene regulation
1
multi-omic
1
dynamical
1
loops
1
peaks
1
TAD
1
Aggregation
1
Preference
1
AP
1
sub-TAD
1
hierarchy
1
tad
1
tads
1
3D
1
stripe
1