bioinformatics 119 sequencing 53 genomics 47 pipeline 44 workflow 41 hacktoberfest 30 dna 28 science 27 workflow-engine 27 usegalaxy 26 Galaxy 21 transcriptome 15 RNA-Seq 14 rna-seq 12 python 12 ETL 11 project 10 NGS 9 snakemake 9 fastq 8 metadata 6 metagenomics 6 sequana 6 bed 5 galaxy 5 chip-seq 5 barcode 4 GUI 4 coverage 4 wgs 4 pipelines 3 bacteria 3 reference-genome 3 hi-c 3 hts 3 sequence-analysis 3 3d-genome 3 illumina 3 quality-control 3 sequence 3 microbiology 3 read-simulation 3 pipeline-submission-engine 3 python3 3 sam 3 bam 3 differential analysis 2 RNADiff 2 RNAseq 2 BED 2 ngs-analysis 2 conversion 2 cancer-genomics 2 high-throughput sequencing 2 next-generation-sequencing 2 rnaseq 2 hifi 2 long-read-sequencing 2 nanopore 2 conda 2 manager 2 vcf 2 server 2 fasta 2 DNA 2 mapper-evaluation 2 ngs-format 2 variant-calling 2 taxonomy 2 sequanix 2 gvcf 2 pacbio 2 de-novo 2 alignment 2 demultiplexing 2 sra 2 atac-seq 2 rna 2 motif 2 reproducibility 2 forensics 2 microhaplotypes 2 dna-seq 2 ChIP-seq 2 database 2 genomic-intervals 2 bioinformatics-pipeline 2 hla-typing 2 long-reads 2 assembly 2 Hi-C 2 contact 2 cnv 2 hla 2 seqann 2 gfe 2 ngs-pipeline 1 algorithm 1 prophage 1 variant finding 1