pypi.org "genomic-data-analysis" keyword
View the packages on the pypi.org package registry that are tagged with the "genomic-data-analysis" keyword.
firecaller 1.0.0
Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data1 version - Latest release: over 5 years ago - 1 dependent repositories - 13 downloads last month - 5 stars on GitHub - 1 maintainer
omacase 1.0
a tool to analyze optical mapping data, with _de novo_ repeat motif detection and analysis capabi...1 version - Latest release: about 2 years ago - 14 downloads last month - 2 stars on GitHub - 1 maintainer
gppy 0.1.4
Genomic Position with Python (GPPY)4 versions - Latest release: 10 months ago - 20 downloads last month - 12 stars on GitHub - 1 maintainer
phigaro 2.4.0
Phigaro is a scalable command-line tool for predicting phages and prophages.34 versions - Latest release: over 1 year ago - 1 dependent repositories - 149 downloads last month - 52 stars on GitHub - 3 maintainers
genomap 1.3.6
Genomap converts tabular gene expression data into spatially meaningful images.24 versions - Latest release: about 2 years ago - 134 downloads last month - 19 stars on GitHub - 1 maintainer
helen 0.0.23
RNN based assembly HELEN. It works paired with MarginPolish.19 versions - Latest release: over 5 years ago - 1 dependent repositories - 22 downloads last month - 71 stars on GitHub - 1 maintainer
Top 7.6% on pypi.org
20 versions - Latest release: 9 months ago - 3 dependent repositories - 197 downloads last month - 383 stars on GitHub - 1 maintainer
selene-sdk 0.6.0
framework for developing sequence-level deep learning networks20 versions - Latest release: 9 months ago - 3 dependent repositories - 197 downloads last month - 383 stars on GitHub - 1 maintainer
open-cravat-multiuser 2.12.1
OpenCRAVAT Multiuser Addon15 versions - Latest release: 5 months ago - 1 dependent repositories - 44 downloads last month - 120 stars on GitHub - 1 maintainer
annsql 1.0.3
A Python SQL tool for converting Anndata objects to a relational DuckDb database. Methods are inc...15 versions - Latest release: 4 months ago - 555 downloads last month - 29 stars on GitHub - 1 maintainer
gene2tab 0.1.5
Creates a table with the presence/absence of genes in samples6 versions - Latest release: almost 2 years ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
gcmapexplorer 1.0.30
A platform to visualize and analyze genome contact maps28 versions - Latest release: over 6 years ago - 1 dependent repositories - 792 downloads last month - 21 stars on GitHub - 1 maintainer
Related Keywords
genomics
8
bioinformatics
5
bioinformatics-tool
4
genomics-visualization
3
single-cell
2
python3
2
deep-learning
2
bioinformatics-pipeline
2
variant-analysis
1
python
1
javascript
1
annotation-tool
1
sampling-methods
1
oxford-nanopore
1
human-genetics
1
genomes
1
genome-sequencing
1
genome-scale-models
1
genome-assembly
1
variant-annotation
1
variant-annotations
1
anndata
1
annsql
1
h5ad
1
sql
1
abricate
1
table
1
Hi-C
1
Genome Contact Map Explorer
1
Contact Map Explorer
1
3D Genome Organization
1
hi-c
1
3d-genome
1
cooler
1
hic
1
bionano
1
optical-mapping
1
command-line-tool
1
bioinformatics-analysis
1
biological-data-analysis
1
genomic-regions
1
phage
1
phages
1
prophage
1
bioinfomatics-pipeline
1
biomarker-discovery
1
biomarkers
1
cell-annotation
1
classification-algorithm
1
data-classification
1
multi-omic-integration
1
regression-algorithms
1
tabular-data
1
trajectory-inference
1
visualization
1
genome-analysis
1