Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "next-generation-sequencing" keyword
sigalign 0.2.0
SigAlign's language binding for python2 versions - Latest release: 11 months ago - 51 downloads last month - 10 stars on GitHub - 1 maintainer
wdldoc 1.7.1
Create WDL documentation using Markdown.14 versions - Latest release: over 2 years ago - 1 dependent repositories - 148 downloads last month - 27 stars on GitHub - 1 maintainer
stjudecloud-oliver 1.4.11
An opinionated Cromwell orchestration system27 versions - Latest release: over 1 year ago - 1 dependent repositories - 151 downloads last month - 40 stars on GitHub - 1 maintainer
seroba 1.0.0
SEROBA: Serotyping for illumina reads3 versions - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 15 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
21 versions - Latest release: about 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
pyfastaq 3.17.0
Script to manipulate FASTA and FASTQ files, plus API for developers21 versions - Latest release: about 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
pm4ngs 0.0.21
PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data an...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 151 downloads last month - 25 stars on GitHub - 1 maintainer
ngsphy 1.0.13
phylogenomic simulation of NGS data13 versions - Latest release: about 6 years ago - 1 dependent repositories - 117 downloads last month - 14 stars on GitHub - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: 8 months ago - 1 dependent repositories - 172 downloads last month - 11 stars on GitHub - 1 maintainer
nglesspy 0.2.2
NGLessPy: Python interface to NGLess3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 2 stars on GitHub - 1 maintainer
divide-seq 5.22
Divide amplicon sequences4 versions - Latest release: over 4 years ago - 1 dependent repositories - 35 downloads last month - 4 stars on GitHub - 1 maintainer
massgenotyping 0.2.2
Python package for microsatellite genotyping from amplicon sequencing data5 versions - Latest release: 4 months ago - 1 dependent repositories - 40 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
16 versions - Latest release: over 6 years ago - 5 dependent repositories - 87 downloads last month - 52 stars on GitHub - 1 maintainer
iva 1.0.9
Iterative Virus Assembler16 versions - Latest release: over 6 years ago - 5 dependent repositories - 87 downloads last month - 52 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
33 versions - Latest release: over 6 years ago - 6 dependent repositories - 145 downloads last month - 212 stars on GitHub - 1 maintainer
circlator 1.5.5
circlator: a tool to circularise genome assemblies33 versions - Latest release: over 6 years ago - 6 dependent repositories - 145 downloads last month - 212 stars on GitHub - 1 maintainer
amptk 1.6.0
AMPtk: amplicon tool kit11 versions - Latest release: 6 months ago - 1 dependent repositories - 65 downloads last month - 35 stars on GitHub - 1 maintainer
icallsv 0.0.7
The module helps to call structural variants using NGS data set on human.1 version - Latest release: over 6 years ago - 1 dependent repositories - 25 downloads last month - 21 stars on GitHub - 1 maintainer
yasim 3.2.0
Yet Another SIMulator for Alternative Splicing Events and Realistic Gene Expression Profile2 versions - Latest release: 5 months ago - 1 dependent package - 37 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly53 versions - Latest release: over 3 years ago - 7 dependent repositories - 285 downloads last month - 151 stars on GitHub - 1 maintainer
albatradis 1.0.1
Comparitive transposon mutagenesis experiment analysis2 versions - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 7 stars on GitHub - 1 maintainer
cloops2 0.0.5
Loop-calling and peak-calling for sequencing-based interaction data, including related analysis u...3 versions - Latest release: 10 months ago - 1 dependent repositories - 49 downloads last month - 35 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
genomics
11
sequencing
7
research
6
pathogen
6
infectious-diseases
6
global-health
6
bioinformatics-pipeline
6
python
3
workflow
3
wdl-workflow
2
wdl
2
computational-biology
2
cromwell
2
workflows
2
ngs
2
differentially-expressed-genes
1
third-generation-sequencing
1
alternative-splicing
1
structural-variation
1
microbial-genomics
1
tradis
1
transposon-mutagenesis
1
peak-calling
1
loop-calling
1
un-limited-resolution
1
rdna
1
mycobiome
1
mtco1
1
microbiome
1
lsu
1
fungi
1
coi
1
co1
1
amplicons
1
read-counts
1
trac-looping
1
stripes
1
rehoboam
1
peaks
1
montage
1
loops
1
hichip
1
hi-c
1
domains
1
differential-enriched-loops
1
clustering
1
cloops2
1
chromatin-interaction
1
chia-pet
1
bioinformatics-tool
1
3d-genome-visualization
1
3d-genome
1
visualization
1
interaction
1
Hi-Trac
1
gene-trees
1
targeted-sequencing
1
coverage
1
next-generation
1
phylogenomics
1
biology
1
rnaseq
1
ngs-pipeline
1
ngs-analysis
1
cwl-workflow
1
chipseq
1
chipexo
1
Biocontainers
1
workflow-execution
1
oliver
1
hpc
1
stjudecloud
1
sequence-alignment
1
algorithm
1
amplicon-sequencing
1
microsatellite
1
genotyping
1
amplicon sequencing
1
NGS
1
dna-barcode-extraction
1
python-embedded-language
1
ngless
1
metagenomics
1
experimental
1
embedded-language
1
domain-specific-language
1
workflow-engine
1
strandedness-inference
1
strandedness
1
gene-model
1
fastq
1
bam
1
sam
1
species-trees
1