Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "medical-imaging" keyword

amid 0.13.0
A curated list of medical imaging datasets with unified interfaces
18 versions - Latest release: 2 months ago - 1 dependent repositories - 85 downloads last month - 33 stars on GitHub - 1 maintainer
amypad-core 0.0.3
Core utilities for the AMYPAD project
4 versions - Latest release: over 3 years ago - 26 downloads last month - 0 stars on GitHub - 2 maintainers
atommic 1.0.1
Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)
2 versions - Latest release: 16 days ago - 208 downloads last month - 0 stars on GitHub - 1 maintainer
beren 0.7.1
REST client for Orthanc DICOM servers
5 versions - Latest release: almost 3 years ago - 3 dependent repositories - 789 downloads last month - 17 stars on GitHub - 1 maintainer
biapy 3.4.3
BiaPy: Bioimage analysis pipelines in Python
27 versions - Latest release: 2 days ago - 427 downloads last month - 76 stars on GitHub - 1 maintainer
biom3d 0.0.38
Biom3d. Framework for easy-to-use biomedical image segmentation.
39 versions - Latest release: about 2 months ago - 713 downloads last month - 17 stars on GitHub - 1 maintainer
bqapi-ucsb 1.0.1
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 18 downloads last month - 34 stars on GitHub - 1 maintainer
brats-toolkit 1.0.16
BraTS Toolkit is a holistic approach to brain tumor segmentation allowing to build modular pipeli...
18 versions - Latest release: 2 months ago - 76 downloads last month - 68 stars on GitHub - 2 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 month ago - 1 dependent repositories - 221 downloads last month - 152 stars on GitHub - 4 maintainers
coexist 0.3.2
Learning simulation parameters from experimental data, from the micro to the macro, from the lapt...
4 versions - Latest release: 11 months ago - 1 dependent repositories - 20 downloads last month - 13 stars on GitHub - 1 maintainer
compay-syntax 0.4.1
Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed comput...
2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 55 stars on GitHub - 1 maintainer
cornerstone-widget 0.0.1rc1
A Jupyter Widget for the Cornerstone Medical Image Viewing Library
1 version - Latest release: over 5 years ago - 15 downloads last month - 25 stars on GitHub - 1 maintainer
csg-dicoms-anonymizer 1.4.2
Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization ...
2 versions - Latest release: about 6 years ago - 13 downloads last month - 2 stars on GitHub - 1 maintainer
ctheaddeformation 0.1.4
Perform Realistic Head Deformations
5 versions - Latest release: over 1 year ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
ctviewer 1.0.0
Interactive utility to view 3D CT images in ipython notebooks
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 14 downloads last month - 14 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.37 thousand downloads last month - 311 stars on GitHub - 4 maintainers
cucim-cu11 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
3 versions - Latest release: about 1 month ago - 231 downloads last month - 311 stars on GitHub - 2 maintainers
cucim-cu12 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
3 versions - Latest release: about 1 month ago - 2 dependent packages - 2.46 thousand downloads last month - 311 stars on GitHub - 2 maintainers
cycpd 0.0.1
Numpy + Cython Implementation of the Coherent Point Drift Algorithm
10 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 2.17 thousand downloads last month - 22 stars on GitHub - 1 maintainer
dartseg 1.0.0
Package for Brain Segmentation
1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 65 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
deepbrain 0.1
Deep Learning-based tools for processing brain images
1 version - Latest release: over 5 years ago - 6 dependent repositories - 106 downloads last month - 124 stars on GitHub - 1 maintainer
delia 1.2.7
DICOM Extraction for Large-scale Image Analysis (DELIA).
33 versions - Latest release: 5 months ago - 1 dependent package - 264 downloads last month - 12 stars on GitHub - 1 maintainer
delira 0.6.0
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and Ten...
9 versions - Latest release: over 4 years ago - 1 dependent repositories - 80 downloads last month - 222 stars on GitHub - 2 maintainers
dicom2jpg 0.1.10
DICOM -> JPG/PNG/BMP/TIFF/ndarray
20 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 682 downloads last month - 29 stars on GitHub - 1 maintainer
dicombrowser 1.4.1
Lightweight portable DICOM viewer with interface for images and tags
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 34 downloads last month - 27 stars on GitHub - 1 maintainer
dicomrttool 2.1.4
Services for reading dicom files, RT structures, and dose files, as well as tools for converting ...
76 versions - Latest release: 2 months ago - 1 dependent repositories - 723 downloads last month - 80 stars on GitHub - 1 maintainer
diffdrr 0.3.12
Auto-differentiable digitally reconstructed radiographs in PyTorch
20 versions - Latest release: 2 months ago - 1 dependent package - 407 downloads last month - 101 stars on GitHub - 1 maintainer
diffpose 0.0.1
Patient-specific intraoperative 2D/3D registration via differentiable rendering
1 version - Latest release: 5 months ago - 50 downloads last month - 66 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 1 maintainer
django-large-image 0.10.0
Dynamic tile server in Django built on top of large-image (and GDAL)
26 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 1.1 thousand downloads last month - 54 stars on GitHub - 3 maintainers
durham-xnet 0.0.4
A CNN to segment X-Ray images
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 38 downloads last month - 92 stars on GitHub - 1 maintainer
etab 0.1.0
ETAB: A Benchmark Suite for Visual Representation Learning in Echocardiography
1 version - Latest release: over 1 year ago - 8 downloads last month - 21 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
fastmri 0.3.0
A large-scale dataset of both raw MRI measurements and clinical MRI images.
4 versions - Latest release: 11 months ago - 1 dependent package - 6 dependent repositories - 883 downloads last month - 1,239 stars on GitHub - 2 maintainers
figuregenerator 0.0.4
Making screenshots for presentations and manuscripts.
4 versions - Latest release: 10 months ago - 1 dependent repositories - 30 downloads last month - 10 stars on GitHub - 1 maintainer
fodnet 1.1.0
FOD-Net Reimplementation.
2 versions - Latest release: 8 months ago - 19 downloads last month - 16 stars on GitHub - 1 maintainer
fuse-med-ml 0.3.0
A python framework accelerating ML based discovery in the medical field by encouraging code reuse...
22 versions - Latest release: about 1 year ago - 1 dependent repositories - 450 downloads last month - 126 stars on GitHub - 1 maintainer
gandlf 0.0.1820240209
PyTorch-based framework that handles segmentation/regression/classification using various DL arch...
381 versions - Latest release: 3 months ago - 1 dependent repositories - 4.09 thousand downloads last month - 137 stars on GitHub - 2 maintainers
hf-deepali 0.6.2
Image, point set, and surface registration library for PyTorch.
12 versions - Latest release: 4 months ago - 252 downloads last month - 23 stars on GitHub - 1 maintainer
histoprep 2.0.5
Read and process histological slide images with python!
55 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 612 downloads last month - 15 stars on GitHub - 1 maintainer
icon-registration 1.1.4
A package for image registration regularized by inverse consistency
14 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 231 downloads last month - 30 stars on GitHub - 1 maintainer
indigo 1.0.5
Fast linear operators for image reconstruction.
6 versions - Latest release: about 6 years ago - 3 dependent repositories - 162 downloads last month - 12 stars on GitHub - 1 maintainer
innereye-dicom-rt 1.1.0
InnerEye DICOM to Nifti conversion functions
4 versions - Latest release: over 1 year ago - 2 dependent repositories - 55 downloads last month - 8 stars on GitHub - 3 maintainers
Top 1.1% on pypi.org
itk 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
50 versions - Latest release: over 1 year ago - 83 dependent packages - 220 dependent repositories - 43 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.4% on pypi.org
itk-core 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
41 versions - Latest release: over 1 year ago - 11 dependent packages - 78 dependent repositories - 47.1 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.5% on pypi.org
itk-filtering 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
38 versions - Latest release: over 1 year ago - 13 dependent packages - 73 dependent repositories - 46.4 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
itk-gpucommon 0.2.0 💰
Core classes for ITK filters accelerated with OpenCL.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 76 downloads last month - 1,336 stars on GitHub - 1 maintainer
itk-gpufinitedifference 0.2.0 💰
Base classes for ITK finite difference filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 1,336 stars on GitHub - 1 maintainer
itk-gpuimagefilterbase 0.2.0 💰
Base classes for ITK image filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 41 downloads last month - 1,336 stars on GitHub - 1 maintainer
itk-gpusmoothing 0.2.0 💰
Common smoothing filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 32 downloads last month - 1,336 stars on GitHub - 1 maintainer
Top 1.5% on pypi.org
itk-io 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
49 versions - Latest release: over 1 year ago - 18 dependent packages - 58 dependent repositories - 41.7 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
itk_napari_conversion 0.3.1
Convert between itk and napari data structures.
4 versions - Latest release: about 3 years ago - 3 dependent repositories - 159 downloads last month - 3 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
itk-numerics 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
32 versions - Latest release: over 1 year ago - 7 dependent packages - 71 dependent repositories - 45.2 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.9% on pypi.org
itk-registration 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
43 versions - Latest release: over 1 year ago - 6 dependent packages - 51 dependent repositories - 41.4 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.9% on pypi.org
itk-segmentation 5.3.0 💰
ITK is an open-source toolkit for multidimensional image analysis
49 versions - Latest release: over 1 year ago - 4 dependent packages - 51 dependent repositories - 41.1 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
lagomorph 1.0.26
Image Registration and Computational Anatomy in PyTorch
14 versions - Latest release: about 3 years ago - 1 dependent repositories - 43 downloads last month - 18 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
lungmask 0.2.20
Package for automated lung segmentation in CT
9 versions - Latest release: about 1 month ago - 1 dependent package - 7 dependent repositories - 1.16 thousand downloads last month - 601 stars on GitHub - 2 maintainers
mda-learn 0.1.1
Manifold Discovery and Analysis (MDA) algorithm for deep learning feature space analysis.
2 versions - Latest release: 6 months ago - 14 downloads last month - 11 stars on GitHub - 1 maintainer
meddlr 0.0.9
Meddlr is a config-driven framework built to simplify ML-based medical image reconstruction and a...
18 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 150 downloads last month - 59 stars on GitHub - 1 maintainer
medicalai 1.3.1
Medical-AI is a AI framework specifically for Medical Applications
37 versions - Latest release: over 1 year ago - 1 dependent repositories - 148 downloads last month - 15 stars on GitHub - 1 maintainer
medical-data 0.2.0 💰
Helpful data utilities for deep learning in medical image analysis/medical image computing
2 versions - Latest release: about 1 year ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
medical-dl-utils 0.1.6 💰
Helpful utilities for deep learning in medical image analysis/medical image computing
9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
medicaltorch 0.2
An open-source pytorch medical framework.
2 versions - Latest release: over 5 years ago - 5 dependent repositories - 56 downloads last month - 830 stars on GitHub - 1 maintainer
medigan 1.0.0
medigan is a modular open-source Python library that provides an interface to multiple generative...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 76 downloads last month - 106 stars on GitHub - 2 maintainers
medimage-pkg 0.9.4
MEDimage is a Python package for processing and extracting features from medical images
4 versions - Latest release: about 1 month ago - 263 downloads last month - 1 maintainer
medimages4tests 0.3.3
Generates dummy medical image data with realistic headers to be used in image handling tests
6 versions - Latest release: 6 months ago - 9 dependent packages - 1 dependent repositories - 1.25 thousand downloads last month - 0 stars on GitHub - 1 maintainer
medipt 0.0.5 removed
Stuff
4 versions - Latest release: 9 months ago - 388 downloads last month - 1 maintainer
Top 4.4% on pypi.org
medmnist 3.0.1
MedMNIST: 18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification
10 versions - Latest release: 4 months ago - 3 dependent packages - 18 dependent repositories - 9.97 thousand downloads last month - 977 stars on GitHub - 1 maintainer
mednoise 1.2.4
mednoise is a python package that contains algorithms to handle and edit large amounts of image-b...
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
medpicpy 1.0.4
A package to simplify loading medical imaging datasets.
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 31 downloads last month - 2 stars on GitHub - 1 maintainer
medreaders 1.0.8
Readers for medical imaging datasets
9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 99 downloads last month - 0 stars on GitHub - 1 maintainer
miqa-python-client 0.1.2
A python library for interacting with a MIQA API
3 versions - Latest release: almost 2 years ago - 13 downloads last month - 29 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
miscnn 1.4.0
Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
61 versions - Latest release: over 2 years ago - 2 dependent repositories - 1.29 thousand downloads last month - 390 stars on GitHub - 1 maintainer
miscnn-tf-1.14 0.32
Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
1 version - Latest release: about 4 years ago - 19 downloads last month - 390 stars on GitHub - 1 maintainer
miscnn-tf-2.0 0.32
Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
2 versions - Latest release: about 4 years ago - 30 downloads last month - 390 stars on GitHub - 1 maintainer
mist-medical 0.4.7a0
MIST is a simple, fully automated framework for 3D medical imaging segmentation.
14 versions - Latest release: 5 days ago - 194 downloads last month - 17 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
miutil 0.12.0
Medical imaging utilities for the AMYPAD and NiftyPET projects
25 versions - Latest release: 12 months ago - 1 dependent repositories - 13.2 thousand downloads last month - 0 stars on GitHub - 2 maintainers
modelhub-ai 0.0.6
A collection of deep learning models with a unified API.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 26 downloads last month - 66 stars on GitHub - 2 maintainers
monai-app-sdk 0.0.0
A framework and associated tools to design, verify and analyze performance of MONAI apps
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 13 downloads last month - 80 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
monai-deploy-app-sdk 2.0.0
A framework and associated tools to design, verify and analyze performance of MONAI apps
16 versions - Latest release: 24 days ago - 6 dependent repositories - 883 downloads last month - 83 stars on GitHub - 3 maintainers
monai-generative 0.2.3
Installer to help to use the prototypes from MONAI generative models in other projects.
3 versions - Latest release: 4 months ago - 1.36 thousand downloads last month - 493 stars on GitHub - 3 maintainers
Top 5.0% on pypi.org
monailabel 0.8.1
Active Learning Toolkit for Healthcare Imaging
47 versions - Latest release: 7 months ago - 4 dependent repositories - 2.23 thousand downloads last month - 550 stars on GitHub - 3 maintainers
Top 6.9% on pypi.org
monailabel-weekly 0.5.dev2340
Active Learning Toolkit for Healthcare Imaging
114 versions - Latest release: 8 months ago - 2 dependent repositories - 1.07 thousand downloads last month - 550 stars on GitHub - 3 maintainers
moosez 2.4.9
An AI-inference engine for 3D clinical and preclinical whole-body segmentation tasks
117 versions - Latest release: 11 days ago - 2 dependent packages - 1 dependent repositories - 2.33 thousand downloads last month - 133 stars on GitHub - 2 maintainers
mrainet 0.1.0
MR acquisition-invariant network.
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 5 stars on GitHub - 1 maintainer
mridc 0.2.0
Data Consistency for Magnetic Resonance Imaging
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 37 downloads last month - 37 stars on GitHub - 1 maintainer
mrqy 0.0.3
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance i...
3 versions - Latest release: 2 months ago - 31 downloads last month - 85 stars on GitHub - 1 maintainer
multimedeval 0.1.1
A Python tool to evaluate the performance of VLM on the medical domain.
2 versions - Latest release: 2 months ago - 56 downloads last month - 18 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
mypy-boto3-medical-imaging 1.34.106
Type annotations for boto3.HealthImaging 1.34.106 service generated with mypy-boto3-builder 7.24.0
11 versions - Latest release: 3 days ago - 2 dependent packages - 1 dependent repositories - 151 thousand downloads last month - 5 stars on GitHub - 1 maintainer
napari-itk-io 0.3.0
File IO with itk for napari
4 versions - Latest release: about 1 year ago - 3 dependent packages - 2 dependent repositories - 138 downloads last month - 7 stars on GitHub - 1 maintainer
nekton 0.2.6
A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion
13 versions - Latest release: 8 months ago - 1 dependent repositories - 44 downloads last month - 7 stars on GitHub - 3 maintainers
Top 3.9% on pypi.org
neurite 0.2
Neural Networks Toolbox for Medical Imaging
2 versions - Latest release: almost 2 years ago - 1 dependent package - 17 dependent repositories - 7.02 thousand downloads last month - 317 stars on GitHub - 1 maintainer
niftynet 0.6.0
An open-source convolutional neural networks platform for research in medical image analysis and ...
11 versions - Latest release: over 4 years ago - 10 dependent repositories - 130 downloads last month - 1,353 stars on GitHub - 2 maintainers
nii2png 0.3.0 💰
A lightweight neuroimaging .nii to .png converter
2 versions - Latest release: about 5 years ago - 1 dependent repositories - 135 downloads last month - 109 stars on GitHub - 1 maintainer
nimpa 2.6.3
CUDA-accelerated Python utilities for high-throughput neuroimage processing and analysis
32 versions - Latest release: 9 months ago - 1 dependent repositories - 152 downloads last month - 16 stars on GitHub - 2 maintainers
nipet 2.2.0
CUDA-accelerated Python utilities for high-throughput PET/MR image reconstruction and analysis
28 versions - Latest release: over 1 year ago - 1 dependent repositories - 161 downloads last month - 28 stars on GitHub - 2 maintainers
nitrain 0.3.0
Cloud-based framework for training and sharing medical imaging AI models
4 versions - Latest release: 24 days ago - 240 downloads last month - 1,844 stars on GitHub - 1 maintainer
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: about 1 month ago - 1 dependent package - 4 dependent repositories - 177 downloads last month - 138 stars on GitHub - 3 maintainers
nobrainer-zoo 0.2.0
A framework for inference and re-training of pretrained neuroimaging models
1 version - Latest release: over 1 year ago - 22 downloads last month - 8 stars on GitHub - 1 maintainer
openjphpy 0.1.0
A Python build of OpenJPH for encoding and decoding High-Throughput JPEG 2000 (HTJ2K) images
1 version - Latest release: 10 months ago - 1 dependent repositories - 25 downloads last month - 6 stars on GitHub - 1 maintainer