Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "metagenomes" keyword
Top 7.4% on pypi.org
64 versions - Latest release: 4 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
pyrodigal 3.3.0
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.64 versions - Latest release: 4 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
pyfastani 0.5.1
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estima...10 versions - Latest release: 3 months ago - 1 dependent repositories - 616 downloads last month - 14 stars on GitHub - 1 maintainer
pyskani 0.1.1
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation ...2 versions - Latest release: about 1 year ago - 348 downloads last month - 17 stars on GitHub - 1 maintainer
traits-finder 1.6
search and summarize traits in genomes and metagenomes7 versions - Latest release: over 4 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
plasflow 1.1.0
PlasFlow - predicting plasmid sequences in metagenomic data4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 42 downloads last month - 88 stars on GitHub - 1 maintainer
metagenomics-focus 1.8
FOCUS: An Agile Profiler for Metagenomic Data4 versions - Latest release: over 2 years ago - 1 dependent repositories - 51 downloads last month - 7 stars on GitHub - 2 maintainers
gretel 0.0.94
An algorithm for recovering potential haplotypes from metagenomes8 versions - Latest release: over 4 years ago - 2 dependent repositories - 72 downloads last month - 31 stars on GitHub - 1 maintainer
mixs-linkml 0.1.3
A LinkML model for the MIxS standard3 versions - Latest release: about 2 years ago - 1 dependent repositories - 29 downloads last month - 33 stars on GitHub - 4 maintainers
Related Keywords
bioinformatics
6
genomics
3
python-library
3
taxonomy
2
python-bindings
2
average-nucleotide-identity
2
ani
2
identity
2
nucleotide
2
average
2
genome
2
fasta
1
metagenome-assembly
1
plasflow
1
plasmid-sequences
1
plasmids
1
prediction
1
tensorflow
1
focus_app
1
identify-organisms
1
standard
1
kmer
1
json-schema
1
gsc
1
contextual-data
1
data model
1
schema
1
linkml
1
microbiome
1
MIxS
1
haplotypes
1
orf
1
gene
1
prodigal
1
bioconda
1
cython-wrapper
1
gene-finding
1
orf-finder
1
python
1
python-interface
1
simd
1
cython-library
1
genomes
1
function
1
traits
1
plasmid
1
metagenome
1
signature
1
ML
1
classification
1
contigs
1