pypi.org "kmer" keyword
View the packages on the pypi.org package registry that are tagged with the "kmer" keyword.
needletail 0.7.0
FASTX parsing and k-mer methods6 versions - Latest release: about 15 hours ago - 1 dependent repositories - 2.94 thousand downloads last month - 185 stars on GitHub - 2 maintainers
cladeomatic 0.1.1
Clade-O-Matic: Automatic recognition of population structures based on canonical SNPs2 versions - Latest release: almost 2 years ago - 29 downloads last month - 1 maintainer
freqgen 0.1.0
Generate DNA sequences with specified amino acid, codon, and k-mer frequencies.1 version - Latest release: over 6 years ago - 1 dependent repositories - 56 downloads last month - 16 stars on GitHub - 1 maintainer
kman 0.0.1
K-mer management tools1 version - Latest release: about 7 years ago - 1 dependent repositories - 32 downloads last month - 0 stars on GitHub - 1 maintainer
sourmash-plugin-containment-search 0.4.5
sourmash plugin for improved output of containment search for metagenomes8 versions - Latest release: 9 months ago - 219 downloads last month - 501 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
77 versions - Latest release: 3 months ago - 15 dependent packages - 21 dependent repositories - 8.01 thousand downloads last month - 501 stars on GitHub - 3 maintainers
sourmash 4.8.14
tools for comparing biological sequences with k-mer sketches77 versions - Latest release: 3 months ago - 15 dependent packages - 21 dependent repositories - 8.01 thousand downloads last month - 501 stars on GitHub - 3 maintainers
kmer-map 0.0.7
A package for visualizing kmers.7 versions - Latest release: 7 months ago - 278 downloads last month - 0 stars on GitHub - 1 maintainer
kcounter 0.1.1
A simple package for counting DNA k-mers in Python. Written in Rust.2 versions - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 503 downloads last month - 6 stars on GitHub - 1 maintainer
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 5 years ago - 1 dependent repositories - 243 downloads last month - 39 stars on GitHub - 1 maintainer
pymer 0.3.3
pymer: Pythonic fast k-mer counting routines13 versions - Latest release: almost 8 years ago - 3 dependent repositories - 302 downloads last month - 0 stars on GitHub - 1 maintainer
vizitig 1.0.3
A python manipulation and visualization of genomic graph data4 versions - Latest release: 3 months ago - 185 downloads last month - 82 stars on GitHub - 2 maintainers
frisk 0.1.10
frisk: Detection of sequence composition anomalies using multiple order kmers.10 versions - Latest release: about 9 years ago - 2 dependent repositories - 291 downloads last month - 2 stars on GitHub - 2 maintainers
stringmlst 0.6.3
Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly...15 versions - Latest release: over 4 years ago - 1 dependent repositories - 273 downloads last month - 43 stars on GitHub - 1 maintainer
kcollections 1.0.5
A BloomFilterTrie implementation to be generally applicable for genomic applications.4 versions - Latest release: about 5 years ago - 1 dependent repositories - 495 downloads last month - 2 stars on GitHub - 2 maintainers
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: over 6 years ago - 1 dependent repositories - 59 downloads last month - 39 stars on GitHub - 1 maintainer
kmerdb 0.8.15 💰
Yet another correction to the 'yet another correction to just a k-mer counter...'50 versions - Latest release: 27 days ago - 1 dependent repositories - 662 downloads last month - 12 stars on GitHub - 1 maintainer
fast-ska 0.9.3
A fast Cython implementation of the "Streaming K-mer Assignment" algorithm initially described in...2 versions - Latest release: over 8 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
metagenomics-focus 1.8
FOCUS: An Agile Profiler for Metagenomic Data4 versions - Latest release: over 3 years ago - 1 dependent repositories - 131 downloads last month - 9 stars on GitHub - 2 maintainers
smudgeplot 0.5.0.0a3
Smudgeplot description3 versions - Latest release: about 1 month ago - 169 downloads last month - 258 stars on GitHub - 1 maintainer
bio-hansel 2.6.1
Subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.19 versions - Latest release: about 4 years ago - 1 dependent repositories - 290 downloads last month - 25 stars on GitHub - 2 maintainers
kmerhash 0.4.4
Generate hash values from a sequence corresponding to kmers in the sequence3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 154 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
16
python
4
hacktoberfest
3
genomics
3
bioinformatics-pipeline
3
rust
3
DNA
3
minhash
2
scaled-minhash
2
sketching
2
sourmash
2
taxonomic-classification
2
taxonomic-profiling
2
pathogen
2
visualization
2
pacbio
2
oxford-nanopore
2
nanopore
2
global-health
2
infectious-diseases
2
long-reads
2
fracminhash
2
plasmid
2
plasmidfinder
2
research
2
uncorrected
2
sequencing
2
k-mer
2
fasta
2
bacterial-genomes
1
fastq-files
1
mlst
1
bloom-filter
1
fastq
1
bgzf
1
k-mer-counting
1
k-mer-frequency
1
k-mer-hashing
1
python-cli
1
kmers
1
hash
1
Aho-Corasick
1
subtyping
1
SNP
1
Enteritidis
1
Heidelberg
1
enterica
1
Salmonella
1
smudgeplot
1
ploidy
1
microbiome
1
metagenomes
1
identify-organisms
1
focus_app
1
biology
1
statistics
1
rbns
1
rna
1
FASTA
1
FASTQ
1
Genotyping
1
population structure
1
codon-usage
1
genetic-algorithm
1
oligonucleotide
1
oligomer
1
unique
1
count
1
sequence
1
batch
1
counter
1
dna
1
uniquer
1
kmap
1
dimensionality reduction
1
sequences
1
umap
1
dna-sequences
1
BCALM
1
De Brujn Graph
1
RNA
1
graph
1
de-novo-assembly
1
debruijn-graph
1
genome-assembly
1
MLST
1
applied-bioinformatics-lab
1
bacterial-database
1