Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "kmer" keyword
kcollections 1.0.5
A BloomFilterTrie implementation to be generally applicable for genomic applications.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 75 downloads last month - 2 stars on GitHub - 2 maintainers
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 4 years ago - 1 dependent repositories - 83 downloads last month - 37 stars on GitHub - 1 maintainer
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: over 5 years ago - 1 dependent repositories - 54 downloads last month - 37 stars on GitHub - 1 maintainer
stringmlst 0.6.3
Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly...15 versions - Latest release: over 3 years ago - 1 dependent repositories - 93 downloads last month - 41 stars on GitHub - 1 maintainer
freqgen 0.1.0
Generate DNA sequences with specified amino acid, codon, and k-mer frequencies.1 version - Latest release: over 5 years ago - 1 dependent repositories - 19 downloads last month - 16 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
71 versions - Latest release: about 1 month ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
sourmash 4.8.8
tools for comparing biological sequences with k-mer sketches71 versions - Latest release: about 1 month ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
sourmash-plugin-containment-search 0.4.3
sourmash plugin for improved output of containment search for metagenomes6 versions - Latest release: 3 months ago - 46 downloads last month - 431 stars on GitHub - 1 maintainer
sourmash-plugin-branchwater 0.9.3
fast command-line extensions for sourmash7 versions - Latest release: 2 months ago - 26 downloads last month - 431 stars on GitHub - 1 maintainer
kmerdb 0.8.2 💰
Yet another corretion to the 'yet another correction to just a k-mer counter...'37 versions - Latest release: 8 days ago - 1 dependent repositories - 255 downloads last month - 12 stars on GitHub - 1 maintainer
kcounter 0.1.1
A simple package for counting DNA k-mers in Python. Written in Rust.2 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 250 downloads last month - 6 stars on GitHub - 1 maintainer
kmer-map 0.0.2
A package for visualizing kmers.2 versions - Latest release: 2 months ago - 39 downloads last month - 0 stars on GitHub - 1 maintainer
pymer 0.3.3
pymer: Pythonic fast k-mer counting routines13 versions - Latest release: about 7 years ago - 3 dependent repositories - 45 downloads last month - 0 stars on GitHub - 1 maintainer
needletail 0.5.0
FASTX parsing and k-mer methods3 versions - Latest release: about 1 year ago - 1 dependent repositories - 172 downloads last month - 160 stars on GitHub - 1 maintainer
metagenomics-focus 1.8
FOCUS: An Agile Profiler for Metagenomic Data4 versions - Latest release: over 2 years ago - 1 dependent repositories - 51 downloads last month - 7 stars on GitHub - 2 maintainers
kmerhash 0.4.4
Generate hash values from a sequence corresponding to kmers in the sequence3 versions - Latest release: about 1 year ago - 1 dependent repositories - 40 downloads last month - 2 stars on GitHub - 1 maintainer
kman 0.0.1
K-mer management tools1 version - Latest release: about 6 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 1 maintainer
frisk 0.1.10
frisk: Detection of sequence composition anomalies using multiple order kmers.10 versions - Latest release: about 8 years ago - 2 dependent repositories - 60 downloads last month - 2 stars on GitHub - 2 maintainers
fast-ska 0.9.3
A fast Cython implementation of the "Streaming K-mer Assignment" algorithm initially described in...2 versions - Latest release: over 7 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
cladeomatic 0.1.1
Clade-O-Matic: Automatic recognition of population structures based on canonical SNPs2 versions - Latest release: about 1 year ago - 10 downloads last month - 1 maintainer
bio-hansel 2.6.1
Subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.19 versions - Latest release: about 3 years ago - 1 dependent repositories - 119 downloads last month - 25 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
15
python
5
hacktoberfest
4
taxonomic-profiling
3
taxonomic-classification
3
sourmash
3
sketching
3
scaled-minhash
3
rust
3
fracminhash
3
minhash
3
DNA
2
k-mer
2
bioinformatics-pipeline
2
genomics
2
global-health
2
infectious-diseases
2
long-reads
2
nanopore
2
oxford-nanopore
2
pacbio
2
fasta
2
plasmid
2
pathogen
2
plasmidfinder
2
uncorrected
2
research
2
uniquer
1
dna
1
counter
1
batch
1
sequencing
1
sequence
1
count
1
unique
1
oligomer
1
oligonucleotide
1
kmers
1
hash
1
microbiome
1
rna
1
rbns
1
statistics
1
biology
1
Aho-Corasick
1
subtyping
1
SNP
1
Enteritidis
1
Heidelberg
1
enterica
1
Genotyping
1
Salmonella
1
population structure
1
bloom-filter
1
MLST
1
applied-bioinformatics-lab
1
bacterial-database
1
bacterial-genomes
1
fastq-files
1
mlst
1
codon-usage
1
genetic-algorithm
1
fastq
1
bgzf
1
k-mer-counting
1
k-mer-frequency
1
k-mer-hashing
1
python-cli
1
kmap
1
visualization
1
dimensionality reduction
1
sequences
1
umap
1
dna-sequences
1
FASTA
1
FASTQ
1
focus_app
1
identify-organisms
1
metagenomes
1