Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "ncbi-sra" keyword
Top 4.2% on pypi.org
38 versions - Latest release: 8 months ago - 5 dependent packages - 5 dependent repositories - 2.13 thousand downloads last month - 292 stars on GitHub - 1 maintainer
pysradb 2.2.0 💰
A Python package for interacting with SRAdb and downloading datasets from SRA/ENA/GEO38 versions - Latest release: 8 months ago - 5 dependent packages - 5 dependent repositories - 2.13 thousand downloads last month - 292 stars on GitHub - 1 maintainer
ncbi-submit 0.8.1
A tool for submitting to NCBI (SRA, BioSample, & GenBank).13 versions - Latest release: 3 months ago - 100 downloads last month - 1 stars on GitHub - 1 maintainer
srautils 1.0.1
fast utils for fetch and dump NCBI SRA archive raw data1 version - Latest release: over 1 year ago - 12 downloads last month - 1 stars on GitHub - 1 maintainer
r2g 1.0.5
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an...6 versions - Latest release: over 3 years ago - 1 dependent repositories - 59 downloads last month - 49 stars on GitHub - 1 maintainer
pyrpipe 0.0.5
pyrpipe6 versions - Latest release: over 3 years ago - 1 dependent repositories - 37 downloads last month - 76 stars on GitHub - 1 maintainer
grabseqs 0.7.0
Easily download reads from next-gen sequencing repositories like NCBI SRA11 versions - Latest release: over 4 years ago - 1 dependent repositories - 86 downloads last month - 101 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
4
bioinformatics-pipeline
3
sra
2
sratoolkit
2
python
2
conda
2
gene-sequence-retrieval
1
homology
1
orthology
1
phylogenetics
1
bioconda
1
bioinformatics-analysis
1
rna-seq
1
rna-seq-pipeline
1
rna-seq-workflows
1
metagenomics
1
ngs
1
sra-toolkit
1
sra-data
1
fastq-dump
1
ncbi-genbank
1
ncbi-biosamples
1
ftp
1
upload
1
submission
1
ncbi
1
ncbi-sra-archive
1
ena
1
pysradb
1