Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "orthology" keyword
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.1 version - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 27 stars on GitHub - 2 maintainers
fdog 0.1.30
Feature-aware Directed OrtholoG search tool74 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 295 downloads last month - 8 stars on GitHub - 1 maintainer
gethogs 1.1.1
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs3 versions - Latest release: 2 months ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
34 versions - Latest release: 2 months ago - 6 dependent packages - 3 dependent repositories - 531 downloads last month - 1 maintainer
pyham 1.2.0
A tool to analyse Hierarchical Orthologous Groups (HOGs)34 versions - Latest release: 2 months ago - 6 dependent packages - 3 dependent repositories - 531 downloads last month - 1 maintainer
h1s 2.2.18
Feature-aware orthology prediction tool28 versions - Latest release: over 3 years ago - 1 dependent repositories - 128 downloads last month - 8 stars on GitHub - 1 maintainer
hamstr1s 2.0.4
Feature-aware orthology prediction tool5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 62 downloads last month - 8 stars on GitHub - 1 maintainer
getphylo 0.2.1
a python package for automated generation of heuristic phylogenetic trees from genbank files7 versions - Latest release: 3 months ago - 46 downloads last month - 13 stars on GitHub - 1 maintainer
sonicparanoid 2.0.5
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and la...65 versions - Latest release: about 1 month ago - 1 dependent repositories - 895 downloads last month - 4 stars on GitLab.com - 1 maintainer
r2g 1.0.5
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an...6 versions - Latest release: over 3 years ago - 1 dependent repositories - 59 downloads last month - 49 stars on GitHub - 1 maintainer
phylopypruner 1.2.6
tree-based orthology inference86 versions - Latest release: about 2 years ago - 1 dependent repositories - 490 downloads last month - 6 stars on GitLab.com - 1 maintainer
orthosnap 1.3.0
orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.8 versions - Latest release: 5 months ago - 1 dependent repositories - 105 downloads last month - 18 stars on GitHub - 1 maintainer
orthofisher 1.1.0
orthofisher20 versions - Latest release: 7 months ago - 1 dependent repositories - 187 downloads last month - 24 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
27 versions - Latest release: 9 months ago - 4 dependent repositories - 680 downloads last month - 521 stars on GitHub - 1 maintainer
eggnog-mapper 2.1.12
Fast functional annotation of novel sequences using eggNOG orthology assignments.27 versions - Latest release: 9 months ago - 4 dependent repositories - 680 downloads last month - 521 stars on GitHub - 1 maintainer
deepnog 1.2.3
Deep learning tool for protein orthologous group assignment4 versions - Latest release: over 3 years ago - 2 dependent repositories - 155 downloads last month - 24 stars on GitHub - 2 maintainers
dcc2 0.2.3
Dynamic core ortholog compilation tool12 versions - Latest release: over 2 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 27 stars on GitHub - 1 maintainer
bio2bel-entrez 0.2.2
A package for parsing and storing Entrez Gene12 versions - Latest release: over 4 years ago - 116 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
orthology-inference
10
bioinformatics
9
phylogenetics
8
python
6
orthologs
4
orthology-assignments
4
evolution
3
phylogenomics
3
homology
3
genomics
3
orthology inference
2
machine-learning
2
homology-search
2
evolutionary-biology
2
orthoxml
2
HOGs
2
shell
2
blast
2
biosql
2
biology
2
bash
2
data-science
2
ftp
2
genetics
2
ncbi
2
orthologues
2
pbs
2
qsub
2
sequence-alignment
2
sge
2
neural-networks
1
computational-biology
1
protein-families
1
algorithm
1
orthologous-groups
1
eggnog
1
protein-sequences
1
h1s
1
hamstr
1
oma
1
biological-expression-language
1
entrez-gene
1
genes
1
ncbigene
1
networks-biology
1
systems-biology
1
terminology
1
language-models
1
phylogeny
1
evolutionary biology
1
bioinformatics-pipeline
1
gene-sequence-retrieval
1
ncbi-sra
1
tree-based
1
fasta
1
newick
1
phylogenetic trees
1
trees
1
functional annotation
1
eggNOG
1
annotations
1
functional-annotation
1
deep-learning
1