Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bed" keyword
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 4 years ago - 1 dependent repositories - 70 downloads last month - 307 stars on GitHub - 2 maintainers
bed-lookup 0.1.0
Lookup a gene by coordinate from a bed6 versions - Latest release: over 1 year ago - 57 downloads last month - 3 stars on GitHub - 1 maintainer
gpseqc 2.3.6
GPSeq-based centrality estimation.4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 8 downloads last month - 2 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
27 versions - Latest release: about 2 months ago - 8 dependent packages - 5 dependent repositories - 245 thousand downloads last month - 163 stars on GitHub - 3 maintainers
bioframe 0.6.4
Operations and utilities for Genomic Interval Dataframes.27 versions - Latest release: about 2 months ago - 8 dependent packages - 5 dependent repositories - 245 thousand downloads last month - 163 stars on GitHub - 3 maintainers
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 11 months ago - 48 downloads last month - 1 maintainer
vcf2variants 1.3
A python tool to convert vcf to varda variant files.7 versions - Latest release: 4 months ago - 1 dependent repositories - 24 downloads last month - 2 stars on GitHub - 1 maintainer
pygvcf2coverage 0.2
A python tool to extract coverage from gvcf files.2 versions - Latest release: about 4 years ago - 1 dependent repositories - 13 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
3 versions - Latest release: almost 5 years ago - 1 dependent package - 15 dependent repositories - 25.5 thousand downloads last month - 6 stars on GitHub - 1 maintainer
deeptoolsintervals 0.1.9
A python module creating/accessing GTF-based interval trees with associated meta-data3 versions - Latest release: almost 5 years ago - 1 dependent package - 15 dependent repositories - 25.5 thousand downloads last month - 6 stars on GitHub - 1 maintainer
glabtop2-py 2.1.0
GlabTop2 (Glacier bed Topography) model6 versions - Latest release: 5 months ago - 1 dependent repositories - 42 downloads last month - 12 stars on GitHub - 1 maintainer
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: 6 months ago - 65 downloads last month - 37,327 stars on GitHub - 2 maintainers
python-bed-lookup 0.1.0
Rapid lookups by coordinate from a bed file1 version - Latest release: over 1 year ago - 5 downloads last month - 3 stars on GitHub - 1 maintainer
exoclasma-index 0.9.5
Reference Sequence and Capture Intervals Preparation for ExoClasma Suite2 versions - Latest release: almost 2 years ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
soda-gallery 1.2.0
Python-based UCSC genome browser gallery generator3 versions - Latest release: 2 months ago - 1 dependent repositories - 75 downloads last month - 12 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 2 years ago - 1 dependent repositories - 411 downloads last month - 41 stars on GitHub - 1 maintainer
ntai 1.0.0
Nucleotide A.I.20 versions - Latest release: over 2 years ago - 1 dependent repositories - 137 downloads last month - 0 stars on GitLab.com - 1 maintainer
giteebed 1.0.1
A image bed based on gitee1 version - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
fusionvet 1.0.1
A bioinformatics tool to visualize and evaluate *known* gene fusions1 version - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 1 maintainer
bedpy 0.0.5
Making bed files computable5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 57 downloads last month - 0 stars on GitLab.com - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 633 downloads last month - 44 stars on GitHub - 1 maintainer
typora-upload-image 0.1.7 removed
A package that can upload images to the image bed in Typora.17 versions - Latest release: about 3 years ago - 25 downloads last month - 11 stars on GitHub
Related Keywords
bioinformatics
7
python
5
fasta
5
ngs
4
genomics
4
gtf
4
genome
3
visualization
3
vcf
3
sequence
2
gene
2
bam
2
biology
2
sequencing
2
image
2
pypi
2
GTF
2
sam
2
gvcf
2
coverage
2
indexing
1
restrictase
1
ucsc
1
BED
1
bigwig
1
cds
1
chip-seq
1
dna-sequences
1
yapf
1
pre-commit-hook
1
hacktoberfest
1
gofmt
1
formatter
1
codeformatter
1
code
1
autopep8
1
server
1
GUI
1
workflow
1
project
1
Inventory
1
timg
1
picture-bed
1
image-bed
1
upload
1
typora
1
maf
1
gff
1
fastq
1
cram
1
cli
1
api
1
bigInteract
1
interact
1
bigBed
1
BAM
1
UCSC
1
validation
1
gene fusion
1
gitee
1
on
1
based
1
A
1
tts
1
tss
1
transcript
1
splicing
1
rna-seq
1
intron
1
genomic
1
exon
1
nuclear-centrality
1
nuclear-architecture
1
gpseq
1
genome-architecture
1
region
1
nucleus
1
centrality
1
cell
1
DNA
1
snps
1
medical
1
genomes
1
genome-sequencing
1
genome-browser
1
genome-annotation
1
ensembl
1
csv-parser
1
cancer-genomics
1
cancer-genomes
1
cancer
1
protein
1
personalized
1
research
1
medicine
1
annotations
1
proteomics
1
proteogenomics
1
Randolph
1
distribution
1