Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "comparative-genomics" keyword
Top 8.1% on pypi.org
19 versions - Latest release: about 1 month ago - 7 dependent packages - 1 dependent repositories - 2.34 thousand downloads last month - 619 stars on GitHub - 1 maintainer
pycirclize 1.4.0
Circular visualization in Python19 versions - Latest release: about 1 month ago - 7 dependent packages - 1 dependent repositories - 2.34 thousand downloads last month - 619 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
108 versions - Latest release: 4 days ago - 1 dependent package - 3 dependent repositories - 1.82 thousand downloads last month - 701 stars on GitHub - 1 maintainer
jcvi 1.4.12
Python utility libraries on genome assembly, annotation and comparative genomics108 versions - Latest release: 4 days ago - 1 dependent package - 3 dependent repositories - 1.82 thousand downloads last month - 701 stars on GitHub - 1 maintainer
zol 1.2.1
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e....2 versions - Latest release: about 1 year ago - 25 downloads last month - 34 stars on GitHub - 1 maintainer
mgcplotter 1.0.1
Microbial Genome Circular plotting tool using Circos3 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 31 stars on GitHub - 1 maintainer
phenotrex 0.6.0
Microbial Phenotype Prediction4 versions - Latest release: over 2 years ago - 1 dependent repositories - 54 downloads last month - 8 stars on GitHub - 2 maintainers
jlsteenwyk-biokit 1.1.1
a versatile toolkit for processing and analyzing diverse types of sequence data15 versions - Latest release: 4 months ago - 1 dependent repositories - 126 downloads last month - 20 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
8 versions - Latest release: almost 1 year ago - 1 dependent package - 2 dependent repositories - 195 downloads last month - 195 stars on GitHub - 2 maintainers
hyphy-python 0.1.11
HyPhy package interface library8 versions - Latest release: almost 1 year ago - 1 dependent package - 2 dependent repositories - 195 downloads last month - 195 stars on GitHub - 2 maintainers
hyphy 0.1.3
HyPhy package interface library2 versions - Latest release: over 7 years ago - 1 dependent repositories - 6 downloads last month - 194 stars on GitHub - 1 maintainer
gbkviz 1.2.0
Simple web application to visualize and compare genomes in Genbank files12 versions - Latest release: about 2 years ago - 1 dependent repositories - 125 downloads last month - 19 stars on GitHub - 1 maintainer
cogclassifier 1.0.5
A tool for classifying prokaryote protein sequences into COG functional category7 versions - Latest release: over 1 year ago - 1 dependent repositories - 101 downloads last month - 37 stars on GitHub - 1 maintainer
chess-hic 0.3.8
Quantitative comparison and automatic feature extraction for chromatin contact data.10 versions - Latest release: 10 months ago - 3 dependent repositories - 74 downloads last month - 26 stars on GitHub - 1 maintainer
camsa 1.0.0
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies35 versions - Latest release: over 7 years ago - 229 downloads last month - 24 stars on GitHub - 1 maintainer
fastdtlmapper 0.3.4
Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool7 versions - Latest release: over 1 year ago - 1 dependent repositories - 76 downloads last month - 11 stars on GitHub - 1 maintainer
recentrifuge 1.14.0
Robust comparative analysis and contamination removal for metagenomics82 versions - Latest release: 3 months ago - 1 dependent repositories - 477 downloads last month - 83 stars on GitHub - 1 maintainer
funannotate 1.8.17
funannotate: eukaryotic genome annotation pipeline14 versions - Latest release: 3 months ago - 1 dependent repositories - 198 downloads last month - 286 stars on GitHub - 1 maintainer
aniclustermap 1.3.0
A tool for drawing ANI clustermap between all-vs-all microbial genomes5 versions - Latest release: 6 months ago - 1 dependent repositories - 69 downloads last month - 41 stars on GitHub - 1 maintainer
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics23 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 269 downloads last month - 219 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
genomics
11
python
9
visualization
6
microbial-genomics
6
evolution
4
genomics-visualization
4
phylogenetics
4
metagenomics
3
synteny
2
comparative-analysis
2
molecular-evolution
2
c-plus-plus
2
science
2
statistical-methods
2
genbank
2
functional-analysis
2
phylogenomics
2
circos
2
matplotlib
2
microbiology
1
gene-ontology
1
dtl-reconciliation
1
fastdtlmapper
1
scaffold-assembly
1
genome-scaffolding
1
genome-assembly
1
asssembly-reconciliation
1
genome assembly
1
scaffolding
1
comparative genomics
1
structural-similarity
1
hi-c
1
chromatin-organisation
1
chromatin
1
protein
1
genome-analysis
1
gff3
1
gff
1
taxonomy
1
clustermap
1
ncbi-submission
1
genome-annotation
1
gene-models
1
robustness
1
ngs
1
nanopore
1
low-biomass
1
lmat
1
kraken
1
contamination
1
clark
1
centrifuge
1
contamination-removal
1
pipeline
1
phenotype-prediction
1
machine-learning
1
ecological-roles
1
data-driven
1
phenotrex
1
allmaps
1
assembly
1
phage
1
mobile-genetic-elements
1
blast
1
gene-clusters
1
genetic-maps
1
detection
1
biosynthetic-gene-clusters
1
bgc
1
variant-calling
1
genome-sequencing
1
sequence-alignments
1
cog
1
functional-annotation
1
COG
1
webapp
1
chord-diagram
1
biopython
1
streamlit
1
gbkviz
1
data-visualization
1
dataviz
1
phylogenetic-trees
1
radar-chart
1
evolutionary-genomics
1
evolutionary-biology
1
xgboost
1
xgb
1
svm
1
sequence-analysis
1