Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cobrapy" keyword
ssbio 0.9.9
Tools to enable structural systems biology20 versions - Latest release: over 6 years ago - 3 dependent repositories - 96 downloads last month - 101 stars on GitHub - 1 maintainer
findcpcli 0.1.0
findCP CLI package9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 96 downloads last month - 3 stars on GitHub - 1 maintainer
micom 0.35.0
Microbial community modeling based on cobrapy.106 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.47 thousand downloads last month - 77 stars on GitHub - 1 maintainer
contrabass 0.2.1
Constraint-based model vulnerabilities analysis4 versions - Latest release: over 2 years ago - 1 dependent repositories - 49 downloads last month - 3 stars on GitHub - 1 maintainer
dexom-python 1.0.2
DEXOM implementation in python using cobrapy17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 195 downloads last month - 2 stars on GitHub - 1 maintainer
modelseedpy 0.3.0
Python package for building and analyzing models using ModelSEED1 version - Latest release: over 1 year ago - 2 dependent repositories - 32 downloads last month - 15 stars on GitHub - 1 maintainer
multitfa 0.1.2
Multivariate thermodynamics-based metabolic flux analysis in Python.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 32 downloads last month - 8 stars on GitHub - 1 maintainer
miom 0.9.0b9
Mixed Integer Optimization for Metabolism15 versions - Latest release: over 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 1 maintainer
findcpcore 0.1.1
findCP core package15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 125 downloads last month - 1 stars on GitHub - 1 maintainer
efmlrs 2.3.6
Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that...17 versions - Latest release: almost 3 years ago - 1 dependent repositories - 155 downloads last month - 3 stars on GitHub - 1 maintainer
biosimulators-cobrapy 0.1.23
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencob...24 versions - Latest release: about 2 years ago - 3 dependent repositories - 223 downloads last month - 2 stars on GitHub - 2 maintainers
modelseedpy-freiburgermsu 0.3.2
Python package for building and analyzing models using ModelSEED9 versions - Latest release: 9 months ago - 28 downloads last month - 15 stars on GitHub - 1 maintainer
straindesign 1.4.1
Computational strain design package for the COBRApy framework20 versions - Latest release: almost 2 years ago - 1 dependent repositories - 399 downloads last month - 31 stars on GitHub - 1 maintainer
corda 0.5.1
Genome-scale model construction with CORDA15 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 201 downloads last month - 21 stars on GitHub - 1 maintainer
riptide 3.4.81
Reaction Inclusion by Parsimony and Transcript Distribution (RIPTiDe)244 versions - Latest release: 11 months ago - 1 dependent repositories - 1.77 thousand downloads last month - 9 stars on GitHub - 1 maintainer
Related Keywords
metabolism
10
python
7
systems-biology
6
metabolic-models
6
modeling
5
constraint-based-modeling
4
cobra
4
metabolic-network
4
computational-biology
3
bioinformatics
3
flux-balance-analysis
3
flux
3
biochemistry
3
chokepoint
3
dead-end
3
sbml
3
fba
2
reconstruction
2
genome-scale
2
fva
2
milp
2
modelseed
2
optimization
2
flux-variability
2
biology
2
combine-archive
1
biosimulators
1
docker
1
biochemical-networks
1
simulation
1
systems
1
sbml-model
1
mplrs
1
lexicographic-reverse-search
1
pfba
1
transcriptomics
1
elementary-flux-modes
1
omex-metadata
1
sed-ml
1
constraint-based
1
mixed-integer
1
strain design
1
flux-space
1
mcs
1
opencobra
1
optcouple
1
optknock
1
robustknock
1
strain-design
1
strain-engineering
1
flux-sampling
1
genome
1
metabolic-reconstruction
1
protein-structure
1
structural-biology
1
structural-systems-biology
1
modelling
1
microbiome
1
microbiota
1
community
1
metabolic modeling
1
hacktoberfest
1
essential-genes
1
essential-reactions
1
vulnerabilities
1
omics-data-integration
1
thermodynamics
1
multivariate
1
flux analysis
1
metabolic
1
TMFA
1
TFA
1
multiTFA
1
multitfa
1
python3
1
tfa
1
tmfa
1
LP
1
MIP
1
metabolic-networks
1
smbl
1
efmtool
1