pypi.org "sbml" keyword
View the packages on the pypi.org package registry that are tagged with the "sbml" keyword.
sbmlutils 0.9.0
sbmlutils are utilities for working with SBML.60 versions - Latest release: 8 months ago - 1 dependent package - 3 dependent repositories - 1.92 thousand downloads last month - 41 stars on GitHub - 1 maintainer
cobra2fn 0.1
Transform a cobra model into a flexible net1 version - Latest release: over 5 years ago - 24 downloads last month - 1 maintainer
biosimulators-amici 0.1.24
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.co...29 versions - Latest release: almost 2 years ago - 2 dependent repositories - 768 downloads last month - 3 stars on GitHub - 2 maintainers
findcpcli 0.1.0
findCP CLI package9 versions - Latest release: over 3 years ago - 1 dependent repositories - 343 downloads last month - 3 stars on GitHub - 1 maintainer
biosimulators-pysces 0.1.33
BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.so...31 versions - Latest release: 6 months ago - 2 dependent repositories - 647 downloads last month - 1 stars on GitHub - 2 maintainers
fbc-curation 0.2.3
FBC reference files for SBML model curation.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 311 downloads last month - 8 stars on GitHub - 1 maintainer
metevolsim 1.0.0
MetEvolSim (Metabolome Evolution Simulator) Python Package29 versions - Latest release: over 1 year ago - 1 dependent repositories - 669 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
62 versions - Latest release: 5 months ago - 7 dependent packages - 14 dependent repositories - 7.74 thousand downloads last month - 14 stars on GitHub - 2 maintainers
petab 0.5.0
Parameter estimation tabular data62 versions - Latest release: 5 months ago - 7 dependent packages - 14 dependent repositories - 7.74 thousand downloads last month - 14 stars on GitHub - 2 maintainers
libroadrunner-experimental 2.2.2
libRoadRunner: A simulation and analysis library for SBML8 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 1.09 thousand downloads last month - 47 stars on GitHub - 3 maintainers
mergem 1.1.0
mergem is a python package and command-line tool for merging, comparing, and translating genome-s...31 versions - Latest release: about 1 year ago - 1 dependent repositories - 1.11 thousand downloads last month - 5 stars on GitHub - 2 maintainers
Top 6.3% on pypi.org
29 versions - Latest release: 9 months ago - 4 dependent packages - 10 dependent repositories - 2.86 thousand downloads last month - 185 stars on GitHub - 1 maintainer
indra 1.23.0
Integrated Network and Dynamical Reasoning Assembler29 versions - Latest release: 9 months ago - 4 dependent packages - 10 dependent repositories - 2.86 thousand downloads last month - 185 stars on GitHub - 1 maintainer
sbml2julia 0.1.1
Optimization tool based on ODE discretisation.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 76 downloads last month - 5 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
122 versions - Latest release: 29 days ago - 5 dependent packages - 13 dependent repositories - 3.89 thousand downloads last month - 116 stars on GitHub - 2 maintainers
amici 0.31.1
Advanced multi-language Interface to CVODES and IDAS122 versions - Latest release: 29 days ago - 5 dependent packages - 13 dependent repositories - 3.89 thousand downloads last month - 116 stars on GitHub - 2 maintainers
caspometabolism 0.1
package generating an sbml qual with support from a sbml qual of reference and caspo network output1 version - Latest release: almost 6 years ago - 1 dependent repositories - 27 downloads last month - 1 maintainer
casq 1.3.3
CaSQ: Celldesigner as Sbml-Qual34 versions - Latest release: 11 months ago - 1 dependent package - 891 downloads last month - 2 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
25 versions - Latest release: 19 days ago - 1 dependent package - 2 dependent repositories - 3.95 thousand downloads last month - 16 stars on GitHub - 2 maintainers
sme 1.9.0
Spatial Model Editor python bindings25 versions - Latest release: 19 days ago - 1 dependent package - 2 dependent repositories - 3.95 thousand downloads last month - 16 stars on GitHub - 2 maintainers
yaml2sbml 0.2.5
A small package to convert ODEs specified in a YAML file to SBML/PEtab6 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 203 downloads last month - 12 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
83 versions - Latest release: 2 months ago - 3 dependent packages - 3 dependent repositories - 3.82 thousand downloads last month - 20 stars on GitHub - 1 maintainer
copasi-basico 0.83
Simplified COPASI interface for python83 versions - Latest release: 2 months ago - 3 dependent packages - 3 dependent repositories - 3.82 thousand downloads last month - 20 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
26 versions - Latest release: 9 months ago - 2 dependent packages - 8 dependent repositories - 2.58 thousand downloads last month - 38 stars on GitHub - 2 maintainers
pysces 1.2.2
The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biologica...26 versions - Latest release: 9 months ago - 2 dependent packages - 8 dependent repositories - 2.58 thousand downloads last month - 38 stars on GitHub - 2 maintainers
sbmlsim 0.2.2
sbmlsim are utilities for the simulation of SBML models.14 versions - Latest release: over 3 years ago - 1 dependent repositories - 280 downloads last month - 5 stars on GitHub - 1 maintainer
pyvipr 1.0.7
Widget to visualize PySB models in Jupyter Notebook26 versions - Latest release: about 3 years ago - 2 dependent repositories - 614 downloads last month - 27 stars on GitHub - 1 maintainer
cnapy 1.2.4
An integrated environment for metabolic network analysis.4 versions - Latest release: 5 months ago - 168 downloads last month - 51 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
100 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 23.9 thousand downloads last month - 492 stars on GitHub - 5 maintainers
cobra 0.29.1
COBRApy is a package for constraint-based modeling of metabolic networks.100 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 23.9 thousand downloads last month - 492 stars on GitHub - 5 maintainers
cobra-utils 0.3.1
TBD8 versions - Latest release: about 5 years ago - 1 dependent repositories - 235 downloads last month - 489 stars on GitHub - 1 maintainer
pamodelpy 0.0.2
Python framework for building and analysing protein allocation models39 versions - Latest release: over 1 year ago - 1.13 thousand downloads last month - 489 stars on GitHub - 1 maintainer
biosimulators-copasi 0.2.23
BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.48 versions - Latest release: 5 months ago - 2 dependent repositories - 1.14 thousand downloads last month - 2 stars on GitHub - 2 maintainers
biosimulators-test-suite 0.1.88
Tools for validating that biosimulation tools are consistent with the BioSimulators standards89 versions - Latest release: over 1 year ago - 1 dependent repositories - 2.23 thousand downloads last month - 7 stars on GitHub - 2 maintainers
sb2l 0.1.3
sb2l Translates the biological models written in SBML into LaTeX code to be compiled and read by ...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 101 downloads last month - 1 stars on GitHub - 1 maintainer
rust_sbml 0.7.0 💰
A parser for SBML10 versions - Latest release: over 3 years ago - 408 downloads last month - 8 stars on GitHub - 1 maintainer
biosimulators-cobrapy 0.1.23
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencob...24 versions - Latest release: about 3 years ago - 3 dependent repositories - 594 downloads last month - 2 stars on GitHub - 2 maintainers
Top 5.7% on pypi.org
60 versions - Latest release: over 1 year ago - 1 dependent package - 18 dependent repositories - 1.03 thousand downloads last month - 130 stars on GitHub - 1 maintainer
memote 0.17.0
the genome-scale metabolic model test suite60 versions - Latest release: over 1 year ago - 1 dependent package - 18 dependent repositories - 1.03 thousand downloads last month - 130 stars on GitHub - 1 maintainer
biosimulators-libsbmlsim 0.0.6
BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/...6 versions - Latest release: over 3 years ago - 3 dependent repositories - 208 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-tellurium 0.1.44
BioSimulators-compliant command-line interface to the Tellurium/roadrunner simulator <https://tel...40 versions - Latest release: 6 months ago - 3 dependent repositories - 983 downloads last month - 2 stars on GitHub - 2 maintainers
Top 8.4% on pypi.org
20 versions - Latest release: over 1 year ago - 1 dependent package - 7 dependent repositories - 671 downloads last month - 19 stars on GitHub - 1 maintainer
cbmpy 0.8.8
CBMPy: https://systemsbioinformatics.github.io/cbmpy/ is a platform for constraint based modellin...20 versions - Latest release: over 1 year ago - 1 dependent package - 7 dependent repositories - 671 downloads last month - 19 stars on GitHub - 1 maintainer
pycoc 0.0.1
PyCoC - an easy to use COPASI API for python1 version - Latest release: about 4 years ago - 1 dependent repositories - 25 downloads last month - 1 maintainer
efmlrs 2.3.6
Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that...17 versions - Latest release: almost 4 years ago - 1 dependent repositories - 249 downloads last month - 4 stars on GitHub - 1 maintainer
biosimulators-masspy 0.1.2
BioSimulators-compliant command-line interface to the MassPY simulation program <https://masspy.r...12 versions - Latest release: 6 months ago - 2 dependent repositories - 295 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 3 years ago - 1 dependent repositories - 178 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-gillespy2 0.1.37
BioSimulators-compliant command-line interface to the GillesPy2 simulation program.31 versions - Latest release: about 3 years ago - 3 dependent repositories - 716 downloads last month - 1 stars on GitHub - 2 maintainers
biomodels 0.3.2
Download from the BioModels API5 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 174 downloads last month - 2 stars on GitHub - 1 maintainer
subsbml 0.9.0
SBML subsystem interaction modeling toolbox in Python1 version - Latest release: over 4 years ago - 1 dependent repositories - 58 downloads last month - 5 stars on GitHub - 1 maintainer
biosimulators-cbmpy 0.1.15
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sour...16 versions - Latest release: about 3 years ago - 3 dependent repositories - 359 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-boolnet 0.1.18
BioSimulators-compliant command-line interface to the BoolNet simulation program.19 versions - Latest release: over 3 years ago - 2 dependent repositories - 418 downloads last month - 0 stars on GitHub - 2 maintainers
benchmark-models-petab 0.0.0a1
A collection of models with experimental data in the PEtab format1 version - Latest release: over 2 years ago - 19 stars on GitHub
Related Keywords
systems-biology
26
computational-biology
18
python
14
simulation
14
modeling
13
SBML
13
sed-ml
13
biosimulators
12
bioinformatics
9
biology
9
systems biology
9
systems
8
metabolism
8
omex
8
combine
8
SED-ML
7
metabolic-models
7
OMEX
6
COMBINE
6
sbml-model
6
cobra
6
computational biology
6
BioSimulators
6
combine-archive
6
biochemical-networks
6
metabolic-network
6
biochemistry
5
sbml-simulation
5
omex-metadata
5
docker
5
copasi
5
modelling
4
kinetic model
4
flux
4
mathematical-model
4
mathematical model
4
fba
4
flux-balance-analysis
4
petab
4
standardization
3
pysb
3
ode
3
parameter-estimation
3
cobrapy
3
fva
3
dynamical-modeling
3
constraint-based-modeling
3
strain-engineering
3
cell-design
3
tellurium
2
computational systems biology
2
console-application
2
mathematical-modelling
2
metabolic-reconstruction
2
kinetic-modeling
2
numerical-simulation
2
optimization
2
linear programming
2
constraint-based
2
numerical simulation
2
fbc
2
kinetic-model
2
hacktoberfest
2
network
2
Modeling
1
Reduction
1
Model
1
Automated
1
biomodels
1
cellml
1
stochss
1
research
1
simulator
1
LaTeX
1
Converter
1
converter
1
latex
1
parser
1
memote
1
QSSA
1
reconstruction
1
flux-balance analysis
1
mixed-integer
1
Hill
1
stoichiometric-modeling
1
functions
1
metabolic-networks
1
metabolic-engineering
1
flux-variability
1
logical model
1
BoolNet
1
logical-model
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benchmarking
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flexible
1
metabolic model
1
biosimulations
1
modelling-framework
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efmtool
1
elementary-flux-modes
1
lexicographic-reverse-search
1