Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "sbml" keyword
Top 4.4% on pypi.org
110 versions - Latest release: 13 days ago - 5 dependent packages - 13 dependent repositories - 2.14 thousand downloads last month - 106 stars on GitHub - 2 maintainers
amici 0.25.0
Advanced multi-language Interface to CVODES and IDAS110 versions - Latest release: 13 days ago - 5 dependent packages - 13 dependent repositories - 2.14 thousand downloads last month - 106 stars on GitHub - 2 maintainers
findcpcli 0.1.0
findCP CLI package9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 96 downloads last month - 3 stars on GitHub - 1 maintainer
biosimulators-libsbmlsim 0.0.6
BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/...6 versions - Latest release: over 2 years ago - 3 dependent repositories - 64 downloads last month - 0 stars on GitHub - 2 maintainers
sb2l 0.1.3
sb2l Translates the biological models written in SBML into LaTeX code to be compiled and read by ...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
biosimulators-test-suite 0.1.88
Tools for validating that biosimulation tools are consistent with the BioSimulators standards88 versions - Latest release: 10 months ago - 1 dependent repositories - 575 downloads last month - 7 stars on GitHub - 2 maintainers
biosimulators-tellurium 0.1.42
BioSimulators-compliant command-line interface to the tellurium simulation program <http://tellur...39 versions - Latest release: 9 months ago - 3 dependent repositories - 212 downloads last month - 1 stars on GitHub - 2 maintainers
Top 5.7% on pypi.org
60 versions - Latest release: 4 months ago - 1 dependent package - 18 dependent repositories - 1.13 thousand downloads last month - 122 stars on GitHub - 2 maintainers
memote 0.17.0
the genome-scale metabolic model test suite60 versions - Latest release: 4 months ago - 1 dependent package - 18 dependent repositories - 1.13 thousand downloads last month - 122 stars on GitHub - 2 maintainers
sbmlutils 0.8.7
sbmlutils are utilities for working with SBML.59 versions - Latest release: 8 months ago - 1 dependent package - 3 dependent repositories - 676 downloads last month - 35 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
28 versions - Latest release: over 1 year ago - 4 dependent packages - 10 dependent repositories - 794 downloads last month - 161 stars on GitHub - 1 maintainer
indra 1.22.0
Integrated Network and Dynamical Reasoning Assembler28 versions - Latest release: over 1 year ago - 4 dependent packages - 10 dependent repositories - 794 downloads last month - 161 stars on GitHub - 1 maintainer
biosimulators-copasi 0.1.35
BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.35 versions - Latest release: about 2 years ago - 2 dependent repositories - 330 downloads last month - 2 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
22 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 1.73 thousand downloads last month - 14 stars on GitHub - 2 maintainers
sme 1.6.0
Spatial Model Editor python bindings22 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 1.73 thousand downloads last month - 14 stars on GitHub - 2 maintainers
libroadrunner-experimental 2.2.2
libRoadRunner: A simulation and analysis library for SBML8 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 310 downloads last month - 36 stars on GitHub - 3 maintainers
Top 6.8% on pypi.org
58 versions - Latest release: 3 months ago - 7 dependent packages - 14 dependent repositories - 5.64 thousand downloads last month - 14 stars on GitHub - 2 maintainers
petab 0.2.9
Parameter estimation tabular data58 versions - Latest release: 3 months ago - 7 dependent packages - 14 dependent repositories - 5.64 thousand downloads last month - 14 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
68 versions - Latest release: 8 days ago - 3 dependent packages - 3 dependent repositories - 3.64 thousand downloads last month - 18 stars on GitHub - 1 maintainer
copasi-basico 0.68
Simplified COPASI interface for python68 versions - Latest release: 8 days ago - 3 dependent packages - 3 dependent repositories - 3.64 thousand downloads last month - 18 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
cobra 0.29.0
COBRApy is a package for constraint-based modeling of metabolic networks.99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
casq 1.3.2
CaSQ: Celldesigner as Sbml-Qual33 versions - Latest release: 2 months ago - 1 dependent package - 343 downloads last month - 2 stars on GitHub - 2 maintainers
biomodels 0.3.2
Download from the BioModels API5 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 40 downloads last month - 2 stars on GitHub - 1 maintainer
subsbml 0.9.0
SBML subsystem interaction modeling toolbox in Python1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 5 stars on GitHub - 1 maintainer
sbml2julia 0.1.1
Optimization tool based on ODE discretisation.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 5 stars on GitHub - 1 maintainer
rust_sbml 0.7.0 💰
A parser for SBML10 versions - Latest release: over 2 years ago - 127 downloads last month - 5 stars on GitHub - 1 maintainer
pyvipr 1.0.7
Widget to visualize PySB models in Jupyter Notebook26 versions - Latest release: about 2 years ago - 2 dependent repositories - 212 downloads last month - 27 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
25 versions - Latest release: 11 days ago - 2 dependent packages - 8 dependent repositories - 1.26 thousand downloads last month - 33 stars on GitHub - 2 maintainers
pysces 1.2.1
The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biologica...25 versions - Latest release: 11 days ago - 2 dependent packages - 8 dependent repositories - 1.26 thousand downloads last month - 33 stars on GitHub - 2 maintainers
pycoc 0.0.1
PyCoC - an easy to use COPASI API for python1 version - Latest release: over 3 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
metevolsim 1.0.0
MetEvolSim (Metabolome Evolution Simulator) Python Package29 versions - Latest release: 8 months ago - 1 dependent repositories - 204 downloads last month - 4 stars on GitHub - 1 maintainer
efmlrs 2.3.6
Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that...17 versions - Latest release: almost 3 years ago - 1 dependent repositories - 155 downloads last month - 3 stars on GitHub - 1 maintainer
cobra-utils 0.3.1
TBD8 versions - Latest release: about 4 years ago - 1 dependent repositories - 68 downloads last month - 442 stars on GitHub - 1 maintainer
cobra2fn 0.1
Transform a cobra model into a flexible net1 version - Latest release: over 4 years ago - 12 downloads last month - 1 maintainer
Top 8.4% on pypi.org
20 versions - Latest release: 7 months ago - 1 dependent package - 7 dependent repositories - 331 downloads last month - 16 stars on GitHub - 1 maintainer
cbmpy 0.8.8
CBMPy: https://systemsbioinformatics.github.io/cbmpy/ is a platform for constraint based modellin...20 versions - Latest release: 7 months ago - 1 dependent package - 7 dependent repositories - 331 downloads last month - 16 stars on GitHub - 1 maintainer
biosimulators-pysces 0.1.25
BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.so...29 versions - Latest release: over 2 years ago - 2 dependent repositories - 305 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-masspy 0.0.9
BioSimulators-compliant command-line interface to the MASSpy simulation program.9 versions - Latest release: about 2 years ago - 2 dependent repositories - 106 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-gillespy2 0.1.37
BioSimulators-compliant command-line interface to the GillesPy2 simulation program.31 versions - Latest release: about 2 years ago - 3 dependent repositories - 465 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-boolnet 0.1.18
BioSimulators-compliant command-line interface to the BoolNet simulation program.19 versions - Latest release: over 2 years ago - 2 dependent repositories - 175 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-cobrapy 0.1.23
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencob...24 versions - Latest release: about 2 years ago - 3 dependent repositories - 223 downloads last month - 2 stars on GitHub - 2 maintainers
biosimulators-amici 0.1.24
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.co...29 versions - Latest release: 11 months ago - 2 dependent repositories - 168 downloads last month - 2 stars on GitHub - 2 maintainers
benchmark-models-petab 0.0.0a1 removed
A collection of models with experimental data in the PEtab format1 version - Latest release: almost 2 years ago - 19 stars on GitHub
pamodelpy 0.0.2
Python framework for building and analysing protein allocation models21 versions - Latest release: 9 months ago - 166 downloads last month - 442 stars on GitHub - 1 maintainer
fbc-curation 0.2.3
FBC reference files for SBML model curation.12 versions - Latest release: over 1 year ago - 1 dependent repositories - 64 downloads last month - 8 stars on GitHub - 1 maintainer
biosimulators-cbmpy 0.1.15
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sour...16 versions - Latest release: about 2 years ago - 3 dependent repositories - 175 downloads last month - 0 stars on GitHub - 2 maintainers
sbmlsim 0.2.2
sbmlsim are utilities for the simulation of SBML models.14 versions - Latest release: over 2 years ago - 1 dependent repositories - 116 downloads last month - 5 stars on GitHub - 1 maintainer
mergem 1.1.0
mergem is a python package and command-line tool for merging, comparing, and translating genome-s...31 versions - Latest release: 3 months ago - 1 dependent repositories - 247 downloads last month - 5 stars on GitHub - 2 maintainers
caspometabolism 0.1
package generating an sbml qual with support from a sbml qual of reference and caspo network output1 version - Latest release: almost 5 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
yaml2sbml 0.2.5
A small package to convert ODEs specified in a YAML file to SBML/PEtab6 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 49 downloads last month - 12 stars on GitHub - 1 maintainer
Related Keywords
systems-biology
25
computational-biology
17
SBML
15
python
14
sed-ml
13
simulation
13
biosimulators
12
systems biology
11
modeling
11
SED-ML
9
omex
8
bioinformatics
8
metabolism
8
BioSimulators
8
computational biology
8
COMBINE
8
combine
8
biology
7
OMEX
7
systems
6
biochemical-networks
6
combine-archive
6
sbml-model
6
metabolic-network
6
metabolic-models
6
sbml-simulation
5
cobra
5
copasi
5
omex-metadata
5
biochemistry
5
docker
5
mathematical-model
4
numerical simulation
4
modelling
4
flux
4
mathematical model
4
kinetic model
4
petab
4
dynamical-modeling
3
cell-design
3
strain-engineering
3
standardization
3
ode
3
cobrapy
3
fba
3
flux-balance-analysis
3
parameter-estimation
3
pysb
3
linear programming
2
kinetic-model
2
optimization
2
constraint-based
2
fbc
2
network
2
console-application
2
hacktoberfest
2
kinetic-modeling
2
tellurium
2
constraint-based-modeling
2
computational systems biology
2
numerical-simulation
2
mathematical-modelling
2
fva
2
differential equations
1
evolution-rate
1
metabolic-abundances
1
efmtool
1
elementary-flux-modes
1
lexicographic-reverse-search
1
mplrs
1
flexible
1
nets
1
ipython
1
jupyter
1
widgets
1
cytoscape
1
graph
1
visualization
1
bionetgen
1
cytoscapejs
1
jupyter-widget
1
jupyterlab-extension
1
network-visualization
1
networkx
1
sbgn
1
mca
1
steady-state
1
evolution
1
metabolome
1
abundances
1
cell biology
1
mathematical modeling
1
flux balance analysis
1
FBA
1
Systems Biology Markup Language
1
BiGG
1
bigg
1
biosimulations
1
cell-biology
1
benchmarking
1