Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "flux-balance-analysis" keyword
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 2 maintainers
pymcadre 1.2.5
The pymCADRE tool is an advanced re-implementation of the metabolic Context-specificity Assessed ...8 versions - Latest release: about 1 year ago - 1 dependent repositories - 52 downloads last month - 12 stars on GitHub - 1 maintainer
contrabass 0.2.1
Constraint-based model vulnerabilities analysis4 versions - Latest release: over 2 years ago - 1 dependent repositories - 49 downloads last month - 3 stars on GitHub - 1 maintainer
pymgpipe 0.16.10
Community level microbiome metabolic modeling in Python5 versions - Latest release: 10 months ago - 42 downloads last month - 6 stars on GitHub - 1 maintainer
pgp-reconstruction 0.1.0
Pathway-Guided Pruning Reconstruction of constraint-based metabolic models8 versions - Latest release: about 1 year ago - 26 downloads last month - 11 stars on GitHub - 1 maintainer
miom 0.9.0b9
Mixed Integer Optimization for Metabolism15 versions - Latest release: over 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 1 maintainer
fastsl 0.1.2
FastSL-py is an efficient algorithm to identify synthetic lethal gene/reaction sets in genome-sca...2 versions - Latest release: about 6 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-cobrapy 0.1.23
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencob...24 versions - Latest release: over 2 years ago - 3 dependent repositories - 223 downloads last month - 2 stars on GitHub - 2 maintainers
biosimulators-cbmpy 0.1.15
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sour...16 versions - Latest release: over 2 years ago - 3 dependent repositories - 175 downloads last month - 0 stars on GitHub - 2 maintainers
Related Keywords
python
5
computational-biology
5
modeling
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systems-biology
4
fba
4
metabolism
4
metabolic-models
3
cobrapy
3
sed-ml
3
sbml
3
systems biology
3
constraint-based-modeling
3
biosimulators
3
simulation
2
omex
2
computational biology
2
combine
2
SBML
2
optimization
1
LP
1
MIP
1
metabolic-networks
1
genome-scale
1
milp
1
microbial-communities
1
metabolic-modeling
1
genome-scale-model
1
genome-scale-metabolic-model
1
community-simulations
1
bioinformatics
1
gapseq
1
mathematical modeling
1
OMEX
1
COMBINE
1
SED-ML
1
kinetic model
1
mathematical model
1
BioSimulators
1
omex-metadata
1
docker
1
combine-archive
1
biochemical-networks
1
biology
1
systems
1
synthetic-lethality-analysis
1
computational-systems-biology
1
linear-programming
1
synthetic-lethals
1
reconstruction
1
numerical simulation
1
flux balance analysis
1
FBA
1
Systems Biology Markup Language
1
BiGG
1
bigg
1
biosimulations
1
cell-biology
1
cell biology
1
pymCADRE
1
tissue-specific metabolic models
1
genome-scale-modeling
1
host-virus-model
1
metabolic-network-reconstruction
1
biochemical network
1
sbml-model
1
systems-biology-simulation
1
tissue-specific-models
1
chokepoint
1
dead-end
1
essential-genes
1
essential-reactions
1
flux-variability
1
vulnerabilities
1
cobra
1
metabolic-reconstruction
1
mgpipe
1
microbiome
1
microbiome-modeling-toolbox
1
carveme
1
PGP Reconstruction
1