Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "biochemistry" keyword
Top 9.4% on pypi.org
8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 290 downloads last month - 798 stars on GitHub - 1 maintainer
molecularnodes 4.0.12
Toolbox for molecular animations with Blender and Geometry Nodes.8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 290 downloads last month - 798 stars on GitHub - 1 maintainer
helixvis 1.0.1
Create 2-dimensional visualizations of alpha-helical peptide sequences2 versions - Latest release: about 4 years ago - 1 dependent repositories - 23 downloads last month - 4 stars on GitHub - 1 maintainer
proteingraph 0.3.0 💰
A package for making graph representations of proteinstructures.6 versions - Latest release: over 3 years ago - 1 dependent repositories - 63 downloads last month - 57 stars on GitHub - 1 maintainer
easymda 0.3.4
Easy MD Analysis (EMDA) is a Python package created with the aim of providing an easy, yet powerf...7 versions - Latest release: 3 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
micom 0.35.0
Microbial community modeling based on cobrapy.106 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.47 thousand downloads last month - 77 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
28 versions - Latest release: over 1 year ago - 4 dependent packages - 10 dependent repositories - 794 downloads last month - 161 stars on GitHub - 1 maintainer
indra 1.22.0
Integrated Network and Dynamical Reasoning Assembler28 versions - Latest release: over 1 year ago - 4 dependent packages - 10 dependent repositories - 794 downloads last month - 161 stars on GitHub - 1 maintainer
hillfit 0.1.7
Model for fitting data with the Hill equation, and exporting the contents18 versions - Latest release: over 1 year ago - 1 dependent repositories - 311 downloads last month - 10 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
cobra 0.29.0
COBRApy is a package for constraint-based modeling of metabolic networks.99 versions - Latest release: 7 months ago - 56 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
hts-doseresponse 0.0.5
Dose Response Curve Fitting4 versions - Latest release: 3 months ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
cbsm 0.0.5
A compartment based scaledown model for modeling the dynamics of a bioreactor6 versions - Latest release: 4 months ago - 46 downloads last month - 2 maintainers
autopeptideml 0.2.12
AutoML system for building trustworthy peptide bioactivity predictors9 versions - Latest release: 12 days ago - 200 downloads last month - 10 stars on GitHub - 2 maintainers
smilesfeaturizer 0.1.3
A Python package that automatically generates derived variables from a column with SMILES (Simpli...4 versions - Latest release: 7 months ago - 34 downloads last month - 2 stars on GitHub - 1 maintainer
smilesfeature 0.1.15
A Python package that automatically generates derived variables from a column with SMILES (Simpli...16 versions - Latest release: 8 months ago - 119 downloads last month - 2 stars on GitHub - 1 maintainer
pycontact 1.0.4
PyContact2 versions - Latest release: over 3 years ago - 1 dependent repositories - 43 downloads last month - 42 stars on GitHub - 1 maintainer
osmolytes 1.3.0
This code attempts to predict the influence of osmolytes on protein stability6 versions - Latest release: over 3 years ago - 1 dependent repositories - 52 downloads last month - 1 stars on GitHub - 1 maintainer
old-pdb 2.0.0
This code reads and writes the old Protein Data Bank format.4 versions - Latest release: about 3 years ago - 1 dependent repositories - 51 downloads last month - 1 stars on GitHub - 1 maintainer
molecupy 1.1.0
A Python molecular modeller with PDB parsing.11 versions - Latest release: over 7 years ago - 1 dependent package - 2 dependent repositories - 187 downloads last month - 1 maintainer
isoelectric 1.0
IPC (Isoelectric Point Calculator) - prediction of isoelectric point of proteins and peptides1 version - Latest release: over 4 years ago - 1 dependent repositories - 54 downloads last month - 1 maintainer
go2pdb 1.0.1
This code identifies Protein Data Bank (PDB) entries with specific Gene Ontology (GO) annotations.2 versions - Latest release: about 3 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 1 maintainer
efmlrs 2.3.6
Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that...17 versions - Latest release: almost 3 years ago - 1 dependent repositories - 155 downloads last month - 3 stars on GitHub - 1 maintainer
dfbapy 0.0.4
Simulate dynamic Flux Balance Analysis (dFBA) of BiGG models, with compatibility to the BiGG-SABI...4 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
contact-map 0.7.0
Contact maps based on MDTraj12 versions - Latest release: over 3 years ago - 1 dependent repositories - 175 downloads last month - 38 stars on GitHub - 2 maintainers
cobra-utils 0.3.1
TBD8 versions - Latest release: about 4 years ago - 1 dependent repositories - 68 downloads last month - 442 stars on GitHub - 1 maintainer
buffer-app 1.0.0
A quick GUI to quickly calculate buffer dilution and adjustment.1 version - Latest release: over 3 years ago - 1 dependent repositories - 22 downloads last month - 0 stars on GitHub - 1 maintainer
bio-jade 1.0
A repository for modules and applications to aid in the design and analysis of Biological molecul...1 version - Latest release: over 6 years ago - 1 dependent repositories - 23 downloads last month - 6 stars on GitHub - 1 maintainer
bigg-sabio 0.0.1
Scrapes SABIO-RK for enzyme kinetics data for given BiGG Model for dFBA simulation.1 version - Latest release: about 2 years ago - 40 downloads last month - 1 stars on GitHub - 2 maintainers
rbapy 2.0.1
Package for automated generation of bacterial Resource Balance Analysis (RBA) models and simulati...2 versions - Latest release: 12 months ago - 1 dependent package - 4 dependent repositories - 70 downloads last month - 11 stars on GitHub - 1 maintainer
rbatools 1.0.3
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) m...5 versions - Latest release: 12 months ago - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 1 maintainer
molgraph 0.6.7
Graph Neural Networks for Molecular Machine Learning38 versions - Latest release: 13 days ago - 1 dependent repositories - 600 downloads last month - 44 stars on GitHub - 1 maintainer
pamodelpy 0.0.2
Python framework for building and analysing protein allocation models21 versions - Latest release: 9 months ago - 166 downloads last month - 442 stars on GitHub - 1 maintainer
brendapyrser 0.0.2
Tools to parse the BRENDA database2 versions - Latest release: almost 2 years ago - 96 downloads last month - 17 stars on GitHub - 1 maintainer
corda 0.5.1
Genome-scale model construction with CORDA15 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 201 downloads last month - 21 stars on GitHub - 1 maintainer
mol2scad 1.1.0
A script to turn molecular coordinates files into SCAD files2 versions - Latest release: over 3 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
pdbsearch 0.4.0 💰
A library for searching for PDB structures using the official APIs.4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.4 versions - Latest release: over 2 years ago - 3 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
ypkpathway 3.0.1
Simulation and documentation of metabolic pathway assemblies using the Yeast Pathway Kit.25 versions - Latest release: almost 5 years ago - 2 dependent repositories - 227 downloads last month - 2 stars on GitHub - 1 maintainer
qpcr 4.1.3
A python package to perform analysis of qPCR data11 versions - Latest release: 7 months ago - 1 dependent repositories - 122 downloads last month - 17 stars on GitHub - 1 maintainer
rcbs.py 0.2.0
Python package useful for analysing MD trajectories and creating QMMM models built on top of MDAn...7 versions - Latest release: over 1 year ago - 21 downloads last month - 3 stars on GitHub - 1 maintainer
biometal 0.1.0
Tools for dealing with metal binding sites.1 version - Latest release: about 6 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
Related Keywords
bioinformatics
22
chemistry
15
python
15
metabolism
11
biology
11
systems-biology
9
modeling
8
computational-biology
8
flux
7
metabolic-models
6
protein
6
cobra
5
metabolic-network
5
proteins
5
sbml
5
biophysics
4
sbml-model
4
systems biology
4
computational biology
4
molecular-dynamics
4
numerical simulation
3
cobrapy
3
molecule
3
science
3
simulation
3
molecules
3
strain-engineering
3
cell-design
3
structural-biology
3
sbml-simulation
3
smiles
2
feature
2
featurizer
2
smiles-strings
2
molecular biology
2
chemical-engineering
2
Computational Chemistry
2
Chemical Data Analysis
2
MMCIF
2
PDB
2
Molecular Descriptor Generation
2
Molecular Informatics
2
Cheminformatics
2
SMILES
2
Python
2
cell biology
2
mathematical modeling
2
FBA
2
molecular-modeling
2
pdb
2
buffer
2
academic
2
python3
2
visualization
2
reconstruction
2
structural-bioinformatics
2
simulations
2
MDAnalysis
2
molecular dynamics
2
molecular-dynamics-simulation
2
hacktoberfest
2
analysis
2
dna
2
resource-allocation
1
genome-scale-models
1
constraint-based-modeling
1
biotechnology
1
resource allocation modellingResource Balance Analysis
1
whole-cell-modeling
1
machine-learning
1
Resource Balance Analysis
1
kinetics
1
SABIO-RK
1
SABIO
1
scraping
1
BiGG
1
dFBA
1
pymol
1
carbohydrates
1
design
1
pyrosetta
1
rosetta
1
protein-protein-interaction
1
protein-ligand-interactions
1
SED-ML
1
COMBINE
1
OMEX
1
RBApy
1
biosimulators
1
cell-biology
1
combine
1
mathematical-modeling
1
numerical-simulation
1
omex
1
rba
1
resource-balance-analysis
1
sed-ml
1
biological-simulations
1
synthetic-biology
1
data-analysis
1