Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "imaging" keyword

cellfinder 1.2.0
Automated 3D cell detection in large microscopy images
97 versions - Latest release: 3 days ago - 3 dependent packages - 2.46 thousand downloads last month - 170 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
pyspm 0.6.2
Library to handle SPM and ToF-SIMS data
29 versions - Latest release: 8 days ago - 1 dependent package - 1 dependent repositories - 2.02 thousand downloads last month - 57 stars on GitHub - 2 maintainers
slicerio 1.0.0
Utilities for 3D Slicer
10 versions - Latest release: 10 days ago - 1 dependent repositories - 1.26 thousand downloads last month - 31 stars on GitHub - 1 maintainer
hitips 1.0.6
HiTIPS: High-Throughput Image Processing Software for FISH data analysis
33 versions - Latest release: 10 days ago - 338 downloads last month - 1 stars on GitHub - 1 maintainer
multiplex-imaging-pipeline 0.2.1
A Python library for multiplex imaging analysis
11 versions - Latest release: 11 days ago - 36 downloads last month - 1 maintainer
Top 1.5% on pypi.org
obspy 1.4.1
ObsPy - a Python framework for seismological observatories.
23 versions - Latest release: 15 days ago - 93 dependent packages - 309 dependent repositories - 38.8 thousand downloads last month - 1,093 stars on GitHub - 4 maintainers
imaging-research 0.1.1
Medical Imaginging Research structuring and automation
17 versions - Latest release: 17 days ago - 228 downloads last month - 0 stars on GitHub - 1 maintainer
frd-score 0.0.1
Package for calculating FrΓ©chet Radiomics Distance (FRD)
1 version - Latest release: 17 days ago - 79 downloads last month - 0 stars on GitHub - 1 maintainer
polarityjam-napari-plugin 0.1.0
polarityjam napari plugin
1 version - Latest release: 19 days ago - 137 downloads last month - 2 stars on GitHub - 1 maintainer
polarityjam 0.2.1
Feature extraction pipeline for vascular cell data
8 versions - Latest release: 19 days ago - 1 dependent package - 137 downloads last month - 2 stars on GitHub - 2 maintainers
imagedata 3.5.4
Read/write medical image data
113 versions - Latest release: 23 days ago - 4 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 9 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
ehtim 1.2.8
Imaging, analysis, and simulation software for radio interferometry
7 versions - Latest release: 28 days ago - 3 dependent repositories - 1.31 thousand downloads last month - 5,280 stars on GitHub - 1 maintainer
itkwasm-downsample 1.2.0
Pipelines for downsampling images.
3 versions - Latest release: 30 days ago - 1 dependent package - 1.46 thousand downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-downsample-emscripten 1.2.0
Pipelines for downsampling images.
3 versions - Latest release: 30 days ago - 1 dependent package - 94 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-downsample-wasi 1.2.0
Pipelines for downsampling images.
4 versions - Latest release: 30 days ago - 2 dependent packages - 1.47 thousand downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-compare-images 5.0.2
Compare images with a tolerance for regression testing.
9 versions - Latest release: about 1 month ago - 828 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-compare-images-emscripten 5.0.2
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
9 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 499 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-compare-images-wasi 5.0.2
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
10 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 414 downloads last month - 179 stars on GitHub - 1 maintainer
itk-webassemblyinterface 1.0b173
IO with the itk-wasm file formats
3 versions - Latest release: about 1 month ago - 660 downloads last month - 179 stars on GitHub - 1 maintainer
scikit-surgerycalibration 0.2.5
scikit-surgerycalibration provides algorithms designed for the calibration of surgical instruments
26 versions - Latest release: about 1 month ago - 1 dependent package - 6 dependent repositories - 334 downloads last month - 7 stars on GitHub - 2 maintainers
scikit-surgerycore 0.7.2
scikit-surgerycore contains commonly used Image Guided Surgery algorithms and tools
30 versions - Latest release: about 1 month ago - 4 dependent packages - 16 dependent repositories - 2.25 thousand downloads last month - 6 stars on GitHub - 2 maintainers
fluosa 0.9.4
Fluorescence Signal Analyzer for calcium imaging on user-defined neural structures.
4 versions - Latest release: about 1 month ago - 106 downloads last month - 0 stars on GitHub - 1 maintainer
imagedata-format-biff 0.0.10
Imagedata format plugin for biff image data
7 versions - Latest release: about 1 month ago - 1 dependent repositories - 126 downloads last month - 0 stars on GitHub - 1 maintainer
itkwasm-compare-meshes-emscripten 0.2.0
Compare meshes and polydata for regression testing.
2 versions - Latest release: about 1 month ago - 1 dependent package - 22 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-compare-meshes-wasi 0.2.0
Compare meshes and polydata for regression testing.
2 versions - Latest release: about 1 month ago - 1 dependent package - 25 downloads last month - 179 stars on GitHub - 1 maintainer
Top 7.6% on pypi.org
itkwasm 1.0b171
Python interface to itk-wasm WebAssembly (Wasm) modules.
31 versions - Latest release: about 1 month ago - 38 dependent packages - 1 dependent repositories - 6.34 thousand downloads last month - 170 stars on GitHub - 1 maintainer
itkwasm-compare-meshes 0.1.0
Compare meshes and polydata for regression testing.
1 version - Latest release: about 1 month ago - 14 downloads last month - 179 stars on GitHub - 1 maintainer
fits2rgb 0.2.1
Merge multiple FITS images into a single FITS RGB file.
2 versions - Latest release: about 1 month ago - 76 downloads last month - 0 stars on GitHub - 1 maintainer
spydcmtk 1.1.6
Simple python dicom toolkit.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 79 downloads last month - 0 stars on GitHub - 1 maintainer
compare-meshes 0.1.0
Compare meshes and polydata for regression testing.
1 version - Latest release: about 2 months ago - 15 downloads last month - 179 stars on GitHub - 1 maintainer
compare-meshes-emscripten 0.1.0
Compare meshes and polydata for regression testing.
1 version - Latest release: about 2 months ago - 1 dependent package - 15 downloads last month - 179 stars on GitHub - 1 maintainer
compare-meshes-wasi 0.1.0
Compare meshes and polydata for regression testing.
1 version - Latest release: about 2 months ago - 1 dependent package - 15 downloads last month - 179 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: about 2 months ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
calscipy 0.8.3
A toolbox for analyzing, designing, and visualizing multiphoton imaging & optogenetics experiments.
33 versions - Latest release: about 2 months ago - 224 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
pylibjpeg-openjpeg 2.2.1
A Python wrapper for openjpeg, with a focus on use as a plugin for for pylibjpeg
14 versions - Latest release: about 2 months ago - 11 dependent packages - 31 dependent repositories - 63.4 thousand downloads last month - 18 stars on GitHub - 3 maintainers
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data
108 versions - Latest release: about 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
album 0.11.0
album is a tool for unifying computational tools across frameworks, languages, and environments
23 versions - Latest release: 2 months ago - 3 dependent packages - 1 dependent repositories - 345 downloads last month - 5 stars on GitLab.com - 2 maintainers
Top 9.8% on pypi.org
pyxel-sim 2.1.1
Pyxel detector simulation framework.
52 versions - Latest release: 2 months ago - 1 dependent package - 2 dependent repositories - 353 downloads last month - 7 stars on GitLab.com - 3 maintainers
Top 5.2% on pypi.org
suite2p 0.14.4
Pipeline for calcium imaging
90 versions - Latest release: 2 months ago - 1 dependent package - 15 dependent repositories - 1.84 thousand downloads last month - 306 stars on GitHub - 2 maintainers
imagedisplayqt 1.1.0
A widget for real time image display in PyQT GUIs.
4 versions - Latest release: 2 months ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
thumbor-aws 0.8.0
thumbor_aws provides extensions for thumbor using AWS
11 versions - Latest release: 2 months ago - 1 dependent repositories - 572 downloads last month - 2 maintainers
Top 1.1% on pypi.org
vispy 0.14.2
Interactive visualization in Python
38 versions - Latest release: 2 months ago - 73 dependent packages - 287 dependent repositories - 96.8 thousand downloads last month - 3,206 stars on GitHub - 3 maintainers
Top 6.9% on pypi.org
pyimzml 1.5.4
Parser for conversion of imzML 1.1.0 files
18 versions - Latest release: 2 months ago - 6 dependent packages - 10 dependent repositories - 912 downloads last month - 32 stars on GitHub - 1 maintainer
azcam 24.2.3
Acquisition and analysis package for scientific imaging
26 versions - Latest release: 2 months ago - 10 dependent packages - 4 dependent repositories - 49 downloads last month - 3 stars on GitHub - 1 maintainer
imagedata-registration 0.2.4
Image registration routines for Imagedata
12 versions - Latest release: 2 months ago - 306 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
imagedata-transport-s3 1.0.3
Imagedata transport plugin for S3/Minio storage
2 versions - Latest release: 2 months ago - 7 downloads last month - 0 stars on GitHub - 1 maintainer
azcam-lbtguiders 24.1.3 removed
Azcam extension for LBTO lbtguiders cameras
3 versions - Latest release: 2 months ago - 258 downloads last month - 0 stars on GitHub - 1 maintainer
mrqy 0.0.3
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance i...
3 versions - Latest release: 2 months ago - 31 downloads last month - 85 stars on GitHub - 1 maintainer
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...
23 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.38 thousand downloads last month - 18 stars on GitHub - 1 maintainer
album-gui 0.4.4
Plugin for launching the GUI of Album
7 versions - Latest release: 2 months ago - 82 downloads last month - 1 maintainer
album-package 0.4.0
album plugin to package solutions into executable install wizards
7 versions - Latest release: 2 months ago - 83 downloads last month - 2 maintainers
visiomatic 3.0.0b2
A web application for visualizing astronomical images
2 versions - Latest release: 2 months ago - 31 downloads last month - 32 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
thumbor 7.7.4
thumbor is an open-source photo thumbnail service by globo.com
115 versions - Latest release: 2 months ago - 13 dependent packages - 106 dependent repositories - 7.1 thousand downloads last month - 9,882 stars on GitHub - 8 maintainers
nii2dcm 0.1.5
nii2dcm: NIfTI to DICOM creation with Python
4 versions - Latest release: 3 months ago - 1 dependent repositories - 404 downloads last month - 46 stars on GitHub - 1 maintainer
azcam-server 24.2.1 removed
Server package for AzCam acquisition and analysis package
5 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 160 downloads last month - 0 stars on GitHub - 1 maintainer
itkwasm-downsample-cucim 0.2.0
Pipelines for downsampling images. cuCIM implementation.
2 versions - Latest release: 3 months ago - 20 downloads last month - 179 stars on GitHub - 1 maintainer
scifireaders 0.11.5
Tools for extracting data and metadata from scientific data files
14 versions - Latest release: 3 months ago - 1 dependent repositories - 246 downloads last month - 13 stars on GitHub - 2 maintainers
azcam-console 24.0 removed
Console package for the AzCam acquisition and analysis package
2 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 71 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.5% on pypi.org
scikit-surgeryvtk 2.1.1
scikit-surgeryvtk implements VTK for Image Guided Surgery applications
60 versions - Latest release: 3 months ago - 2 dependent packages - 7 dependent repositories - 590 downloads last month - 18 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
scikit-surgerynditracker 1.0.1
Interface for Northern Digital (NDI) Trackers with data to NumPy arrays
30 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 552 downloads last month - 38 stars on GitHub - 2 maintainers
tttrlib 0.24.3
Read, write & process time-tagged time-resolved (TTTR) data.
5 versions - Latest release: 3 months ago - 307 downloads last month - 18 stars on GitHub - 1 maintainer
pudzu-pillar 0.9.3
Various imaging utilities, monkey-patched onto Pillow
3 versions - Latest release: 3 months ago - 2 dependent packages - 2 dependent repositories - 30 downloads last month - 1 stars on GitHub - 1 maintainer
pylibczirw 4.1.0 πŸ’°
A python wrapper around the libCZI C++ library with reading and writing functionality.
15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 2.25 thousand downloads last month - 9,295 stars on GitHub - 1 maintainer
sidpy 0.12.3
Python utilities for storing, visualizing, and processing Spectroscopic and Imaging Data (SID)
17 versions - Latest release: 4 months ago - 10 dependent packages - 1 dependent repositories - 2.88 thousand downloads last month - 11 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
pyusid 0.0.12
Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)
17 versions - Latest release: 4 months ago - 2 dependent packages - 4 dependent repositories - 2.03 thousand downloads last month - 25 stars on GitHub - 2 maintainers
itkwasm-dicom 6.0.0
Read files and images related to DICOM file format.
14 versions - Latest release: 4 months ago - 134 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-dicom-emscripten 6.0.0
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
14 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 108 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-dicom-wasi 6.0.0
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
14 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 123 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-mesh-io 1.0.0
Input and output for scientific and medical image file formats.
4 versions - Latest release: 4 months ago - 46 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-mesh-io-emscripten 1.0.0
Input and output for scientific and medical image file formats.
5 versions - Latest release: 4 months ago - 1 dependent package - 37 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-mesh-io-wasi 1.0.0
Input and output for scientific and medical image file formats.
5 versions - Latest release: 4 months ago - 1 dependent package - 57 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-image-io 1.0.1
Input and output for scientific and medical image file formats.
5 versions - Latest release: 4 months ago - 1 dependent package - 1.14 thousand downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-image-io-emscripten 1.0.1
Input and output for scientific and medical image file formats.
5 versions - Latest release: 4 months ago - 1 dependent package - 629 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-image-io-wasi 1.0.1
Input and output for scientific and medical image file formats.
6 versions - Latest release: 4 months ago - 1 dependent package - 722 downloads last month - 179 stars on GitHub - 1 maintainer
itkwasm-compress-stringify 3.0.0
Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.
14 versions - Latest release: 4 months ago - 131 downloads last month - 179 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
itkwasm-compress-stringify-emscripten 3.0.0
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 157 downloads last month - 179 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
itkwasm-compress-stringify-wasi 3.0.0
High performance spatial analysis in a web browser, Node.js, and across programming languages and...
15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 116 downloads last month - 179 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
pylibjpeg 2.0.0
A Python framework for decoding JPEG and decoding/encoding DICOM RLE data, with a focus on suppor...
7 versions - Latest release: 4 months ago - 13 dependent packages - 55 dependent repositories - 51.5 thousand downloads last month - 42 stars on GitHub - 3 maintainers
neunorm 1.6.3
neutron normalization data
32 versions - Latest release: 5 months ago - 1 dependent repositories - 451 downloads last month - 1 stars on GitHub - 1 maintainer
piligraphs 0.0.3
Pillow extension for drawing graphs and charts.
4 versions - Latest release: 5 months ago - 33 downloads last month - 0 stars on GitHub - 1 maintainer
Top 0.5% on pypi.org
pydicom 2.4.4 πŸ’°
A pure Python package for reading and writing DICOM data
38 versions - Latest release: 5 months ago - 300 dependent packages - 1,519 dependent repositories - 561 thousand downloads last month - 1,764 stars on GitHub - 3 maintainers
itk-growcut 0.2.1
Segments a 3D image from foreground and background seeds.
4 versions - Latest release: 6 months ago - 1 dependent repositories - 303 downloads last month - 14 stars on GitHub - 3 maintainers
ispy2-mri 0.1.0
Log receipt of MRI exams into the database
4 versions - Latest release: 6 months ago - 41 downloads last month - 0 stars on GitHub - 1 maintainer
itk-ioomezarrngff 0.2.1
IO for images stored in zarr format.
11 versions - Latest release: 6 months ago - 1 dependent package - 952 downloads last month - 8 stars on GitHub - 3 maintainers
multipropreg 0.1.1
Image registration network using deformation field
2 versions - Latest release: 7 months ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
multiscale-spatial-image 1.0.0
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serial...
11 versions - Latest release: 7 months ago - 3 dependent packages - 1 dependent repositories - 7.23 thousand downloads last month - 26 stars on GitHub - 1 maintainer
atomai 0.7.8
Deep and machine learning for atom-resolved data
29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
seislib 0.6.24
Multi-scale Seismic Imaging
37 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 115 downloads last month - 63 stars on GitHub - 1 maintainer
album-environments 0.2.2
Album unifies computational tools across frameworks, languages, and environments.
4 versions - Latest release: 8 months ago - 44 downloads last month - 0 stars on GitLab.com - 1 maintainer
album-solution-api 0.6.1
Album is a framework for unifying computational tools across frameworks, languages, and environme...
2 versions - Latest release: 9 months ago - 1 dependent package - 46 downloads last month - 0 stars on GitLab.com - 1 maintainer
pymrt 0.0.1.2
Python Magnetic Resonace Tools
25 versions - Latest release: 9 months ago - 3 dependent repositories - 115 downloads last month - 5 stars on GitHub - 1 maintainer
bglib 0.0.4
Band Excitation and General Mode analysis and visualization codes
5 versions - Latest release: 9 months ago - 1 dependent package - 150 downloads last month - 3 stars on GitHub - 2 maintainers
bronchipy 0.2.0
Supporting tools for processing the output of the AirFlow pipeline.
11 versions - Latest release: 9 months ago - 90 downloads last month - 1 maintainer
Top 5.8% on pypi.org
thumbor-png-optimizers 0.1.0
Contributed extensions for Thumbor
1 version - Latest release: 9 months ago - 2 dependent repositories - 9,825 stars on GitHub - 1 maintainer
pyfluo 1.0
A python library for Ca imaging data analysis.
2 versions - Latest release: 9 months ago - 2 dependent repositories - 2 stars on GitHub - 1 maintainer
color_detection 0.1.1
A project based on color detection in natural images
1 version - Latest release: 9 months ago - 0 stars on GitHub - 1 maintainer
pyfibrebundle 1.3.4
Image processing of images acquired through fibre imaging bundle, including core removal, mosaici...
10 versions - Latest release: 9 months ago - 28 downloads last month - 6 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data
86 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
codedapertures 0.7.1
a python package for generating coded apertures
12 versions - Latest release: 10 months ago - 86 downloads last month - 10 stars on GitHub - 1 maintainer