Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "omics" keyword
Top 6.9% on pypi.org
26 versions - Latest release: 17 days ago - 3 dependent packages - 1 dependent repositories - 153 thousand downloads last month - 5 stars on GitHub - 1 maintainer
mypy-boto3-omics 1.34.95
Type annotations for boto3.Omics 1.34.95 service generated with mypy-boto3-builder 7.24.026 versions - Latest release: 17 days ago - 3 dependent packages - 1 dependent repositories - 153 thousand downloads last month - 5 stars on GitHub - 1 maintainer
pymean 0.30
The pyMEAN package is designed to facilitate semi-automated enrichment analysis for metabolomic e...4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 25 downloads last month - 8 stars on GitHub - 1 maintainer
pynmranalysis 1.1.3
python library for NMR preprocessing and analysis9 versions - Latest release: over 2 years ago - 1 dependent repositories - 70 downloads last month - 3 stars on GitHub - 1 maintainer
dimepy 1.0.1
Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass dire...14 versions - Latest release: over 3 years ago - 1 dependent repositories - 68 downloads last month - 9 stars on GitHub - 1 maintainer
atlasapprox 0.2.0
Cell atlas approximations, Python API3 versions - Latest release: 6 months ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
146 versions - Latest release: about 2 years ago - 26 dependent packages - 196 dependent repositories - 18.1 thousand downloads last month - 135 stars on GitHub - 1 maintainer
loompy 3.0.7
Work with Loom files for single-cell RNA-seq data146 versions - Latest release: about 2 years ago - 26 dependent packages - 196 dependent repositories - 18.1 thousand downloads last month - 135 stars on GitHub - 1 maintainer
gneiss 0.4.6
Compositional data analysis tools and visualizations11 versions - Latest release: over 4 years ago - 7 dependent repositories - 65 downloads last month - 55 stars on GitHub - 1 maintainer
xomics 0.2.0
Python framework for eXplainable Omics analysis2 versions - Latest release: 7 months ago - 19 downloads last month - 5 stars on GitHub - 1 maintainer
gemcat 1.2.0
A toolbox for gene expression-based prediction of metabolic alterations4 versions - Latest release: about 2 months ago - 54 downloads last month - 1 maintainer
openst 0.1.2
The computational pipeline for the Open-ST method.10 versions - Latest release: 12 days ago - 637 downloads last month - 25 stars on GitHub - 2 maintainers
omdctk 1.0
OMD Curation Toolkit1 version - Latest release: 10 months ago - 10 downloads last month - 2 stars on GitHub - 1 maintainer
omicslearn 0.0.0
Awesome omicslearn1 version - Latest release: 12 months ago - 12 downloads last month - 1 maintainer
csppinet 1.2
A Python package for context-specific protein-protein interaction network construction and analys...3 versions - Latest release: 12 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
omicverse 1.5.9
OmicVerse: A single pipeline for exploring the entire transcriptome universe32 versions - Latest release: 11 days ago - 1 dependent repositories - 974 downloads last month - 133 stars on GitHub - 1 maintainer
xomx 0.1.16
xomx: a python library for computational omics15 versions - Latest release: 4 months ago - 53 downloads last month - 4 stars on GitHub - 1 maintainer
types-aiobotocore-omics 2.12.3
Type annotations for aiobotocore.Omics 2.12.3 service generated with mypy-boto3-builder 7.23.219 versions - Latest release: about 1 month ago - 4 dependent packages - 4.34 thousand downloads last month - 0 stars on GitHub - 1 maintainer
pysummarizedexperiment 0.2.0
A Python port of R's SummarizedExperiment package4 versions - Latest release: almost 2 years ago - 14 downloads last month - 6 stars on GitHub - 1 maintainer
socube 0.0.5
A simple python package for doublet detection in scRNA-seq data15 versions - Latest release: almost 2 years ago - 68 downloads last month - 7 stars on GitHub - 1 maintainer
unfinnigan 0.0.1
Python file parsing toolkit for mass spec .raw files1 version - Latest release: about 6 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
pyomic 1.2.9
A python framework library for omics analysis32 versions - Latest release: about 1 year ago - 1 dependent repositories - 162 downloads last month - 133 stars on GitHub - 1 maintainer
pyomics 0.0.1.dev6
A library for dealing with omic-data in the life sciences3 versions - Latest release: about 7 years ago - 1 dependent repositories - 44 downloads last month - 1 maintainer
omicsintegrator 2.3.10
Prize-Collecting Steiner Forests for Interactomes4 versions - Latest release: over 5 years ago - 1 dependent repositories - 42 downloads last month - 49 stars on GitHub - 1 maintainer
omics_pipe 1.1.3
A Computational Framework for Reproducible Multi-Omics Data Analysis2 versions - Latest release: 9 months ago - 2 dependent repositories - 18 downloads last month - 1 maintainer
olsapy 2.0.1
a package for orthogonal linear separation analysis (OLSA)2 versions - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 1 maintainer
mprod-package 0.0.5a1
Software implementation for tensor-tensor m-product framework5 versions - Latest release: 5 months ago - 1 dependent repositories - 30 downloads last month - 11 stars on GitHub - 1 maintainer
loom-viewer 0.32.4
View .loom files in the browser42 versions - Latest release: over 5 years ago - 1 dependent repositories - 155 downloads last month - 35 stars on GitHub - 1 maintainer
geneutil 0.0.11
a package for handling genes1 version - Latest release: over 2 years ago - 1 dependent repositories - 3 downloads last month - 1 maintainer
genairics 0.2.2
GENeric AIRtight omICS pipelines30 versions - Latest release: over 3 years ago - 1 dependent repositories - 102 downloads last month - 0 stars on GitHub - 1 maintainer
garnet 0.5.0
12 versions - Latest release: over 6 years ago - 1 dependent repositories - 71 downloads last month - 4 stars on GitHub - 1 maintainerenrich-omics 0.2.1
Package to perform enrichment analysis in python using EnrichR and OpenTargets APIs21 versions - Latest release: about 2 years ago - 1 dependent repositories - 121 downloads last month - 16 stars on GitHub - 1 maintainer
enan 1.0.4
a package for ENrichment ANalyses3 versions - Latest release: over 2 years ago - 1 dependent repositories - 47 downloads last month - 1 maintainer
driven 0.0.3
driven - data-driven constraint-based analysis5 versions - Latest release: over 7 years ago - 7 dependent repositories - 48 downloads last month - 3 maintainers
dimedbpy 0.1.2
Python wrapper for DIMEdbs REST API.6 versions - Latest release: over 3 years ago - 1 dependent repositories - 32 downloads last month - 5 stars on GitHub - 1 maintainer
depro 0.0.12
a package for Decomposition of Profile Data4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 41 downloads last month - 1 maintainer
rim-interpret 0.0.5
Interpretability metrics for machine learning models5 versions - Latest release: 9 months ago - 38 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
27 versions - Latest release: 8 days ago - 1 dependent repositories - 460 downloads last month - 128 stars on GitHub - 1 maintainer
pypath-omnipath 0.16.15
Molecular signaling prior knowledge processing27 versions - Latest release: 8 days ago - 1 dependent repositories - 460 downloads last month - 128 stars on GitHub - 1 maintainer
regulas 2023.7.1
Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data2 versions - Latest release: 10 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
sspa 1.0.2
Single sample pathway analysis tools for omics data13 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 172 downloads last month - 9 stars on GitHub - 1 maintainer
aggmap 1.2.1
Jigsaw-like AggMap: A Robust and Explainable Omics Deep Learning Tool10 versions - Latest release: 8 months ago - 1 dependent repositories - 101 downloads last month - 33 stars on GitHub - 1 maintainer
cg-gnn 0.3.2
Train a graph neural network on cell graphs.14 versions - Latest release: 4 months ago - 1 dependent package - 17 downloads last month - 4 stars on GitHub - 1 maintainer
pyiomica 1.3.3
Omics Analysis Tool Suite20 versions - Latest release: over 2 years ago - 1 dependent repositories - 122 downloads last month - 15 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
20
python
9
transcriptomics
6
transcriptome
5
chemoinformatics
4
machine-learning
4
metabolomics
4
deep-learning
3
biology
3
processing
3
single-cell
3
pca
2
rna-seq
2
loom
2
network
2
data-integration
2
proteomics
2
analysis
2
mypy
2
typeshed
2
autocomplete
2
autogenerated
2
documentation
2
types
2
botocore
2
type-annotations
2
bulk-rna-seq
2
RNA-seq
2
pathway-enrichment-analysis
2
longitudinal
2
enrichment-analysis
1
enrichr
1
enrichment
1
drug-repurposing
1
chemical-formulas
1
genomics
1
omics-data
1
opentargets
1
targets
1
chemical-elements
1
metabolism
1
high-throughput
1
tSVDM
1
tensor decomposition
1
data-science
1
linear-algebra
1
multiway
1
numerical-analysis
1
scientific-computing
1
spatio-temporal
1
tca
1
tcam
1
tensor
1
tensor-algebra
1
tensor-decomposition
1
tensor-factorization
1
tensor-product
1
time-series-analysis
1
pipelines
1
epigenetics
1
drug-discovery
1
pathway-analysis
1
pathway-databases
1
ai
1
clustering
1
visualization
1
gnn
1
pathology
1
graph
1
cancer
1
predictive-modeling
1
predictive-medicine
1
precision-medicine
1
precision-oncology
1
precision-pathology
1
precision-health
1
precision-healthcare
1
longitudinal-data
1
time-series
1
time-series-clustering
1
metabolic-models
1
interpretability
1
lime
1
machine learning
1
modelling
1
permutation feature importance
1
rim
1
shap
1
systems biology
1
molecular biology
1
signaling
1
database
1
genetic-regulatory-network
1
molecular-biology
1
pathway
1
resource
1
software
1
splicing
1
identifier-mapping
1
boto3
1