pypi.org "transcriptome" keyword
View the packages on the pypi.org package registry that are tagged with the "transcriptome" keyword.
coralsnake 0.0.40
Transcriptome mapping utils39 versions - Latest release: 5 months ago - 668 downloads last month - 1 maintainer
raisin.box 1.4
A package used in the Raisin web application2 versions - Latest release: over 12 years ago - 2 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
raisin.recipe.transformation 1.1.1
A Buildout recipe for transforming data for the Raisin data warehouse1 version - Latest release: over 12 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
raisin.restish 1.3
A package used in the Raisin web application2 versions - Latest release: over 12 years ago - 2 dependent repositories - 56 downloads last month - 1 maintainer
raisin.recipe.server 1.1.7
A Buildout recipe for configuring the Raisin web application4 versions - Latest release: over 12 years ago - 2 dependent repositories - 102 downloads last month - 1 maintainer
raisin.restyler 1.3
A package used in the Raisin web application2 versions - Latest release: over 12 years ago - 2 dependent repositories - 57 downloads last month - 1 maintainer
enan 1.0.4
a package for ENrichment ANalyses3 versions - Latest release: over 3 years ago - 1 dependent repositories - 128 downloads last month - 1 maintainer
raisin.recipe.extract 1.1.3
A Buildout recipe for loading data into the Raisin data warehouse2 versions - Latest release: over 12 years ago - 2 dependent repositories - 60 downloads last month - 1 maintainer
lafite 1.0.2
Nanopore Direct RNA-seq Transcriptome Assembly4 versions - Latest release: over 2 years ago - 1 dependent repositories - 87 downloads last month - 3 stars on GitHub - 1 maintainer
raisin.restkit 1.1.1
A package used in the Raisin web application1 version - Latest release: over 12 years ago - 2 dependent repositories - 32 downloads last month - 1 maintainer
eastr 1.1.2
Tool for emending alignments of spuriously spliced transcript reads3 versions - Latest release: about 2 months ago - 705 downloads last month - 11 stars on GitHub - 2 maintainers
bookend-rna 1.2.1
End-guided transcript assembler for short and long RNA-seq reads.17 versions - Latest release: over 1 year ago - 1 dependent repositories - 390 downloads last month - 16 stars on GitHub - 1 maintainer
raisin.resource 1.4.1
A package used in the Raisin web application3 versions - Latest release: about 12 years ago - 2 dependent repositories - 89 downloads last month - 1 maintainer
disc 1.1.6
A highly scalable and accurate inference of gene expression and structure for single-cell transcr...14 versions - Latest release: almost 4 years ago - 1 dependent repositories - 807 downloads last month - 10 stars on GitHub - 1 maintainer
umitools 0.3.4
A toolset for handling sequencing data with unique molecular identifiers (UMIs)3 versions - Latest release: almost 7 years ago - 2 dependent repositories - 140 downloads last month - 15 stars on GitHub - 1 maintainer
geneutil 0.0.11
a package for handling genes1 version - Latest release: over 3 years ago - 1 dependent repositories - 46 downloads last month - 1 maintainer
olsapy 2.0.1
a package for orthogonal linear separation analysis (OLSA)2 versions - Latest release: over 4 years ago - 1 dependent repositories - 93 downloads last month - 1 maintainer
raisin.recipe.dashboard 1.1.1
A Buildout recipe for creating a dashboard for Raisin1 version - Latest release: over 12 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
wormneuroatlas 0.0.6
A Python package combining multimodal C. elegans’ neural datasets9 versions - Latest release: about 2 years ago - 677 downloads last month - 6 stars on GitHub - 1 maintainer
swan-vis 1.0.3
swan is a tool for visualizing and analyzing transcript isoforms14 versions - Latest release: almost 5 years ago - 1 dependent repositories - 284 downloads last month - 54 stars on GitHub - 1 maintainer
isonclust 0.0.6
De novo clustering of long-read transcriptome reads.7 versions - Latest release: over 5 years ago - 1 dependent repositories - 243 downloads last month - 56 stars on GitHub - 1 maintainer
mavis 3.1.2
A Structural Variant Post-Processing Package40 versions - Latest release: over 1 year ago - 1 dependent repositories - 980 downloads last month - 72 stars on GitHub - 2 maintainers
grape.recipe.pipeline 1.1.16
A Buildout recipe installing Grape RNA-Seq pipelines13 versions - Latest release: over 11 years ago - 3 dependent repositories - 169 downloads last month - 1 maintainer
raisin.page 1.3
A package used in the Raisin web application1 version - Latest release: over 12 years ago - 2 dependent repositories - 31 downloads last month - 1 maintainer
pypandeg 0.0.1
DEG Analysis Using Pan-transcriptome Data Construction1 version - Latest release: 3 months ago - 43 downloads last month - 0 stars on GitHub - 1 maintainer
grape.pipeline.runner 1.0
Console script for running Grape RNA-Seq pipelines1 version - Latest release: over 12 years ago - 2 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
depro 0.0.12
a package for Decomposition of Profile Data4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 115 downloads last month - 1 maintainer
raisin.recipe.load 1.1.2
A Buildout recipe for loading data into the Raisin data warehouse1 version - Latest release: over 12 years ago - 2 dependent repositories - 32 downloads last month - 1 maintainer
tmerge 2.0.3
Merge transcriptome read-to-genome alignments into non-redundant transcript models.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 93 downloads last month - 0 stars on GitHub - 1 maintainer
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species1 version - Latest release: about 2 years ago - 59 downloads last month - 6 stars on GitHub - 1 maintainer
garnet 0.5.0
12 versions - Latest release: over 7 years ago - 1 dependent repositories - 356 downloads last month - 4 stars on GitHub - 1 maintainerraisin.pyramid 1.2.1
A package used in the Raisin web application2 versions - Latest release: about 12 years ago - 2 dependent repositories - 68 downloads last month - 1 maintainer
isocon 0.3.3
Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq r...6 versions - Latest release: about 5 years ago - 1 dependent repositories - 146 downloads last month - 15 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
27
ngs
15
RNA-Seq
14
pipeline
14
ETL
11
omics
5
long-read
5
chemoinformatics
4
rna-seq
3
pacbio-iso-seq
3
single-cell
2
python
2
genome
2
clustering
2
sequencing
2
transcript
2
transcriptomics
2
rnaseq
2
PacBio
2
genomics
2
CCS
2
transcriptome-assembly
2
visualization
2
oxford-nanopore
2
Iso-Seq
2
Nanopore
2
long-reads
1
ont
1
bioinformatics-tool
1
bioinformatics-pipeline
1
long-read-rna
1
stringtie2
1
merge
1
tmerge
1
DEG
1
structural-variation
1
Technologies
1
Oxford
1
error-correction
1
ccs
1
epigenetics
1
data-integration
1
tai
1
scrna-seq-analysis
1
scanpy
1
orthofinder
1
gene-expression-profiles
1
gene-expression
1
expression-profiles
1
evolution
1
phylostratigraphy
1
orthologs
1
gene age
1
orthomap
1
tgs
1
sequencing-rna
1
rna-seq-pipeline
1
rna-seq-data
1
pacbioreadsconnection
1
pacbio
1
PCR
1
UMI
1
identifier
1
molecular
1
unique
1
small
1
RNA-seq
1
semi-supervised-learning
1
imputation
1
deep-learning
1
rna
1
assembler
1
rna-seq-analysis
1
ngs-analysis
1
bionformatics
1
nanopore
1
direct-rna-sequencing
1
DRS
1
mapping
1
isoform
1
transcription
1
swan
1
signal-propagation
1
neuroscience
1
dashboard
1
unique-molecular-identifier
1
umi
1
small-rna
1
high-throughput-sequencing
1
RNA
1
umitools
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deep
1
high-throughput
1
depth
1
material
1
starting
1
cycle
1
duplicates
1