Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "splicing" keyword
splice-q 1.0.0
SPLICE-q is a fast and user-friendly Python tool for genome-wide SPLICing Efficiency quantification1 version - Latest release: over 3 years ago - 1 dependent repositories - 31 downloads last month - 8 stars on GitHub - 1 maintainer
splicekit 0.5.1
splicekit: comprehensive toolkit for splicing analysis from short-read RNA-seq13 versions - Latest release: 4 months ago - 142 downloads last month - 13 stars on GitHub - 1 maintainer
spliced 0.0.18
Emulate or predict splicing outcomes.9 versions - Latest release: over 1 year ago - 1 dependent repositories - 42 downloads last month - 0 stars on GitHub - 1 maintainer
splam 1.0.10
Splice junction scoring tool30 versions - Latest release: 6 months ago - 162 downloads last month - 28 stars on GitHub - 1 maintainer
cispliceai 1.1.1
CI-SpliceAI: Predicting splicing disruptions, trained on all isoforms3 versions - Latest release: over 1 year ago - 133 downloads last month - 366 stars on GitHub - 1 maintainer
suppa 2.2.2
A tool to study splicing across multiple conditions at high speed and accuracy.4 versions - Latest release: over 6 years ago - 1 dependent repositories - 67 downloads last month - 239 stars on GitHub - 1 maintainer
splicejunxchx 2.8
characterize the splice junctions outputted by SJ.out.tab file21 versions - Latest release: almost 4 years ago - 1 dependent repositories - 302 downloads last month - 0 stars on GitHub - 2 maintainers
spada 1.26.5
Find splicing-led, functional changes of the proteome.55 versions - Latest release: about 5 years ago - 1 dependent repositories - 408 downloads last month - 10 stars on GitHub - 1 maintainer
snapit 0.145
Spliced Neoantigen Pipeline for Immunotherapy45 versions - Latest release: about 6 years ago - 1 dependent repositories - 96 downloads last month - 1 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 2 years ago - 1 dependent repositories - 411 downloads last month - 41 stars on GitHub - 1 maintainer
hiv-isoform-filter 1.0.2
Filters .gtf file of suspected HIV isoforms and confirms the isoform identities1 version - Latest release: 5 months ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
regulas 2023.7.1
Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data2 versions - Latest release: 10 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
mmsplice 2.4.0
Predict splicing variant effect from VCF17 versions - Latest release: almost 1 year ago - 1 dependent repositories - 378 downloads last month - 38 stars on GitHub - 2 maintainers
spliceai-pytorch 0.0.4
SpliceAI - Pytorch4 versions - Latest release: over 1 year ago - 29 downloads last month - 8 stars on GitHub - 1 maintainer
Related Keywords
rna-seq
4
transcriptomics
4
bioinformatics
4
alternative
3
splicing-quantification
2
genomics
2
variant-effect-prediction
2
analysis
2
machine-learning
2
python
2
deep-learning
2
genomic
1
gtf
1
intron
1
ngs
1
transcript
1
tss
1
gene
1
exon
1
dna-sequences
1
chip-seq
1
cds
1
bigwig
1
bed
1
python3
1
tts
1
HIV
1
Isoforms
1
ONT sequencing
1
omics
1
software
1
mmsplice
1
vep-plugin
1
artificial intelligence
1
RNA splicing
1
artificial-intelligence
1
biology
1
computational-biology
1
deep-neural-networks
1
reproduction
1
reproduction-code
1
splicing-analyses
1
splicekit
1
spack
1
packages
1
alignment
1
annotation
1
convolutional-neural-networks
1
residual-networks
1
splice-junctions
1
spliced-alignment
1
transcript-assembly
1
rna
1
machine learning
1
SpliceAI
1
clustered-events
1
differential-splicing-analysis
1
inclusion-level
1
psi-calculation
1
psi-values
1
transcript-isoform
1
networks
1
alternative-splicing
1
isoform-switches
1
protein-protein-interaction
1
protein-structure
1
neoantigen
1
neoepitope
1
immunotherapy
1
cancer
1
GTF
1
BED
1