pypi.org "RNA-seq" keyword
View the packages on the pypi.org package registry that are tagged with the "RNA-seq" keyword.
uce-model 0.1.4
Universal Cell Embedding model for single-cell RNA-seq data5 versions - Latest release: about 1 year ago - 871 downloads last month - 133 stars on GitHub - 1 maintainer
omicverse 1.6.10 💰
OmicVerse: A single pipeline for exploring the entire transcriptome universe43 versions - Latest release: 4 months ago - 1 dependent repositories - 2.83 thousand downloads last month - 603 stars on GitHub - 1 maintainer
akey 0.0.5
akey5 versions - Latest release: about 1 year ago - 1 dependent package - 213 downloads last month - 1 maintainer
salusts 2.8.6
A Python package for SaluSTS workflow.6 versions - Latest release: 5 months ago - 201 downloads last month - 1 maintainer
fastqpick 0.1.0
Fast and memory-efficient sampling of DNA-Seq or RNA-seq fastq data with or without replacement.1 version - Latest release: 3 months ago - 41 downloads last month - 25 stars on GitHub - 1 maintainer
xsc 0.0.12
xsc12 versions - Latest release: about 1 year ago - 487 downloads last month - 1 maintainer
ngs-toolkit 0.25.1
A toolkit for NGS analysis with Python.31 versions - Latest release: over 4 years ago - 1 dependent repositories - 558 downloads last month - 14 stars on GitHub - 1 maintainer
blacktie 0.2.1
A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.4 versions - Latest release: almost 12 years ago - 3 dependent repositories - 127 downloads last month - 26 stars on GitHub - 1 maintainer
omicfate 0.0.1
OmicFate: Unraveling the Secrets of Cellular Fate Determination1 version - Latest release: 9 months ago - 68 downloads last month - 2 stars on GitHub - 1 maintainer
omics_pipe 1.1.3
A Computational Framework for Reproducible Multi-Omics Data Analysis2 versions - Latest release: over 1 year ago - 2 dependent repositories - 49 downloads last month - 1 maintainer
dogma-data 0.2.19
Data processing for Dogma19 versions - Latest release: 6 months ago - 759 downloads last month - 1 maintainer
eqtlseq 17.5.28
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data2 versions - Latest release: almost 8 years ago - 1 dependent repositories - 54 downloads last month - 5 stars on GitHub - 1 maintainer
mirtop 0.4.30
Small RNA-seq annotation59 versions - Latest release: 11 days ago - 1 dependent package - 2 dependent repositories - 1.13 thousand downloads last month - 18 stars on GitHub - 1 maintainer
umitools 0.3.4
A toolset for handling sequencing data with unique molecular identifiers (UMIs)3 versions - Latest release: almost 7 years ago - 2 dependent repositories - 140 downloads last month - 15 stars on GitHub - 1 maintainer
pyeasyfuse 2.0.3
EasyFuse is a pipeline to detect fusion transcripts from RNA-seq data with high accuracy.2 versions - Latest release: over 1 year ago - 97 downloads last month - 49 stars on GitHub - 2 maintainers
mutclust 0.1.1
MutClust: Mutual rank-based coexpression, clustering and GO term enrichment analysis.3 versions - Latest release: about 1 month ago - 138 downloads last month - 0 stars on GitHub - 1 maintainer
msisensor-rna 0.1.5
msisensor-rna Microsatellite Instability (MSI) detection with RNA sequencing data.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 127 downloads last month - 16 stars on GitHub - 1 maintainer
trapes 0.1
TCR Reconstruction Algorithm for Paired-End Single cell1 version - Latest release: over 7 years ago - 1 dependent repositories - 32 downloads last month - 0 stars on GitHub - 1 maintainer
scicast 0.8.27
scicast: Single Cell Iterative Clustering and Statistical Testing. A package for interrogating si...16 versions - Latest release: about 8 years ago - 1 dependent repositories - 370 downloads last month - 5 stars on GitHub - 1 maintainer
gene-scoring 0.1.4
Gene set scoring package for single-cell RNA sequencing data with GPU acceleration.5 versions - Latest release: 3 months ago - 206 downloads last month - 0 stars on GitHub - 1 maintainer
pymodulon 0.2.1
Python package for analyzing and visualizing iModulons.7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 251 downloads last month - 13 stars on GitHub - 2 maintainers
wonderpeaks-preprocessing 0.2.4
preprocessing functions for ChIP-seq and RNA-seq in Fungi with WonderPeaks14 versions - Latest release: 19 days ago - 252 downloads last month - 0 stars on GitHub - 1 maintainer
varseek 0.0.1
Placeholder.1 version - Latest release: 4 months ago - 53 downloads last month - 1 maintainer
singlecell-cookbook 0.3.1
A collection of tools for analyzing single-cell genomics data.7 versions - Latest release: 4 months ago - 267 downloads last month - 0 stars on GitHub - 1 maintainer
deside 1.3.2
A unified DEep-learning and SIngle-cell based DEconvolution method for solid tumors8 versions - Latest release: 7 months ago - 1 dependent repositories - 214 downloads last month - 2 stars on GitHub - 1 maintainer
brooklyn-plot 0.0.4
Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus R...4 versions - Latest release: over 1 year ago - 179 downloads last month - 0 stars on GitHub - 1 maintainer
thestral 0.5.1
A simple single cell RNA-seq analysis package12 versions - Latest release: almost 7 years ago - 1 dependent repositories - 238 downloads last month - 0 stars on GitHub - 1 maintainer
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 3 years ago - 1 dependent repositories - 515 downloads last month - 1 stars on GitHub - 1 maintainer
km-walk 2.2.2
A software for RNA-seq investigation using k-mer decomposition4 versions - Latest release: 11 months ago - 1 dependent repositories - 147 downloads last month - 10 stars on GitHub - 2 maintainers
ncbi-counts 0.2.0
Download the NCBI-generated RNA-seq count data by specifying the Series accession number(s), and ...2 versions - Latest release: 11 months ago - 222 downloads last month - 1 stars on GitHub - 1 maintainer
seqcluster 1.2.8
Small RNA-seq pipeline39 versions - Latest release: about 4 years ago - 3 dependent repositories - 330 downloads last month - 37 stars on GitHub - 1 maintainer
wonderpeaks 0.1.14
functions for peakcalling enriched peaks in ChIP-seq and untranslateed regions in 3'RNA-seq in Fungi15 versions - Latest release: 3 months ago - 246 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
12 versions - Latest release: 7 months ago - 5 dependent repositories - 1.27 thousand downloads last month - 1 maintainer
rseqc 5.0.4
QC package for RNA-seq data.12 versions - Latest release: 7 months ago - 5 dependent repositories - 1.27 thousand downloads last month - 1 maintainer
octopy-st 0.0.1a0 removed
Tool for analyzing cell closeness in spatial transcriptomic data3 versions - Latest release: over 2 years ago
Related Keywords
bioinformatics
13
single-cell
7
sequencing
5
NGS
4
transcriptomics
4
rna-seq
4
ChIP-seq
4
single
3
cell
3
scanpy
3
deep-learning
2
uce
2
pytorch
2
genome
2
miRNA
2
analysis
2
Yeast
2
mirna
2
Fungi
2
dynamic UTR
2
UTR
2
peak calling
2
WonderPeaks
2
embedding
2
clustering
2
omics
2
seq
2
anndata
2
sc
2
extras
2
DNA-seq
2
scRNA-seq
2
extra
2
iModulon
1
ICA
1
regulation
1
spatial
1
octopy
1
varseek
1
MERSCOPE
1
genomics
1
DeSide
1
python
1
GPU acceleration
1
gene scoring
1
k-means
1
PCA
1
microsatellite-instability
1
immunotherapy
1
dynamic-detection
1
Tumor only
1
Immunotherapy
1
Microsatellite instability
1
metabolomics
1
gene ontology
1
leiden
1
squidpy
1
smallrna
1
report
1
trna
1
snoRNA
1
NCBI
1
Bioinformatics
1
Gene Expression Omnibus
1
GEO
1
variant
1
k-mer
1
Ribo-seq
1
polarity
1
alignment
1
coverage
1
Singel-cell
1
sn-RNAseq
1
sc-RNAseq
1
QC
1
transcriptional bursting
1
co-expression
1
bioinformatics tools
1
cellxgene
1
RNA analysis
1
single nucleus-RNA
1
single cell-RNA
1
single nucleus
1
single cell
1
brooklyn
1
deconvolution
1
MERFISH
1
mutual rank
1
eqtl
1
Bayesian
1
eQTL
1
HPC
1
exome
1
WES
1
WGS
1
pipeline
1
biology
1
CummeRbund
1
bowtie
1
cufflinks
1