Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "single-cell-analysis" keyword
celescope 2.0.8
Single Cell Analysis Pipelines61 versions - Latest release: 3 months ago - 1 dependent repositories - 330 downloads last month - 80 stars on GitHub - 1 maintainer
vipcca 0.2.7
single cell integration12 versions - Latest release: about 2 years ago - 1 dependent repositories - 117 downloads last month - 8 stars on GitHub - 1 maintainer
icat-sc 0.1.4
Identify cell states across treatments in single-cell RNA sequencing experiments4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 15 downloads last month - 4 stars on GitHub - 1 maintainer
rnakinetics 0.1
Biological prior guided single-cell kinetics inference.2 versions - Latest release: 7 months ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
pycomplexheatmap 1.7.4 💰
A python package to plot complex heatmap45 versions - Latest release: 5 days ago - 1.35 thousand downloads last month - 235 stars on GitHub - 1 maintainer
cytotable 0.0.7
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with P...7 versions - Latest release: about 1 month ago - 1 dependent repositories - 118 downloads last month - 4 stars on GitHub - 2 maintainers
scdynamics 0.1
Biological prior guided single-cell kinetics inference.1 version - Latest release: 7 months ago - 8 downloads last month - 2 stars on GitHub - 1 maintainer
rnadynamics 0.1
Biological prior guided single-cell kinetics inference.1 version - Latest release: 7 months ago - 12 downloads last month - 2 stars on GitHub - 1 maintainer
sckinetics 0.2.4
Biological prior guided single-cell kinetics inference.5 versions - Latest release: 4 months ago - 38 downloads last month - 2 stars on GitHub - 1 maintainer
spatialprofilingtoolbox 0.23.3
Toolbox for spatial analysis of single cell data.89 versions - Latest release: 4 days ago - 1 dependent package - 1 dependent repositories - 536 downloads last month - 22 stars on GitHub - 1 maintainer
neurochat 1.2.0
NeuroChaT: Neuron Characterisation Toolbox2 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 2 maintainers
randomly 0.1.5
A Library for Denoising Single-Cell Data with Random Matrix Theory1 version - Latest release: over 5 years ago - 1 dependent repositories - 44 downloads last month - 36 stars on GitHub - 1 maintainer
dictys 1.1.0
Context specific and dynamic gene regulatory network reconstruction and analysis2 versions - Latest release: 5 months ago - 25 downloads last month - 98 stars on GitHub - 1 maintainer
pypairs 3.2.3
A python scRNA-Seq classifier37 versions - Latest release: over 3 years ago - 1 dependent repositories - 240 downloads last month - 3 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
13 versions - Latest release: about 6 years ago - 4 dependent packages - 7 dependent repositories - 216 downloads last month - 67 stars on GitHub - 1 maintainer
mnnpy 0.1.9
Mutual nearest neighbors correction in python.13 versions - Latest release: about 6 years ago - 4 dependent packages - 7 dependent repositories - 216 downloads last month - 67 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
8 versions - Latest release: over 1 year ago - 20 dependent packages - 16 dependent repositories - 9.65 thousand downloads last month - 175 stars on GitHub - 1 maintainer
harmonypy 0.0.9
A data integration algorithm.8 versions - Latest release: over 1 year ago - 20 dependent packages - 16 dependent repositories - 9.65 thousand downloads last month - 175 stars on GitHub - 1 maintainer
cosg 1.0.1
Accurate and fast cell marker gene identification with COSG1 version - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 87 downloads last month - 35 stars on GitHub - 1 maintainer
ccsf 1.0.8
Leveraging cell-cell similarity from gene expression data for high-performance spatial and tempor...6 versions - Latest release: 9 months ago - 54 downloads last month - 0 stars on GitHub - 1 maintainer
matchclot 0.1.1.dev1
Installable matchclot package.2 versions - Latest release: about 1 year ago - 27 downloads last month - 5 stars on GitHub - 1 maintainer
scslat 0.2.1
A graph deep learning based tool to align single cell spatial omics data2 versions - Latest release: about 1 year ago - 39 downloads last month - 56 stars on GitHub - 1 maintainer
pyspade 0.1.2
Single cell Perturbations - Analysis of Differential gene Expression10 versions - Latest release: about 1 month ago - 92 downloads last month - 1 stars on GitHub - 1 maintainer
transmorph 0.2.8
A unifying data integration framework.20 versions - Latest release: 11 months ago - 1 dependent repositories - 174 downloads last month - 10 stars on GitHub - 1 maintainer
scvega 0.0.2
VEGA: a VAE Enhanced by Gene Annotations for interpretable scRNA-seq deep learning1 version - Latest release: about 2 years ago - 1 dependent repositories - 28 downloads last month - 13 stars on GitHub - 1 maintainer
scomix 0.0.1
Python package for analysis of data from single-cell data-science.1 version - Latest release: over 3 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
scmer 0.1.3
Manifold preserving marker selection for single-cell data9 versions - Latest release: 6 months ago - 1 dependent repositories - 47 downloads last month - 22 stars on GitHub - 1 maintainer
scimap 2.0.4
Spatial Single-Cell Analysis Toolkit237 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.06 thousand downloads last month - 51 stars on GitHub - 1 maintainer
qpsphere 0.5.9
library for analyzing spherical objects in phase imaging28 versions - Latest release: about 2 years ago - 2 dependent repositories - 310 downloads last month - 4 stars on GitHub - 2 maintainers
htsimaging 1.0.5
High-Throughput Single-cell Imaging analysis.6 versions - Latest release: 6 months ago - 1 dependent repositories - 36 downloads last month - 5 stars on GitHub - 1 maintainer
demuxalot 0.4.1
Scalable and reliable demulitplexing for single-cell RNA sequencing.2 versions - Latest release: 3 months ago - 1 dependent repositories - 34 downloads last month - 20 stars on GitHub - 1 maintainer
celltometry 0.0.1
Learn single-cell data structure through topological bases, graphs and layouts1 version - Latest release: about 2 years ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
portal-sc 1.0.2
An efficient, accurate and flexible method for single-cell data integration.1 version - Latest release: almost 2 years ago - 12 downloads last month - 28 stars on GitHub - 1 maintainer
scouts 0.1.4
Single Cell Outlier Selector5 versions - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 3 stars on GitHub - 1 maintainer
sctape 1.1.2
deep learning tools for bulk RNA-seq deconvolution and gene expression analysis24 versions - Latest release: about 1 year ago - 1 dependent repositories - 135 downloads last month - 41 stars on GitHub - 1 maintainer
Related Keywords
single-cell
13
bioinformatics
8
python
8
rna-seq
7
single-cell-rna-seq
5
computational-biology
5
deep-learning
4
kinetics
4
pseudo-time
4
single-cell-genomics
3
spatial-transcriptomics
3
data-science
3
data-integration
3
clustering
3
single-cell-omics
2
spatial-analysis
2
single-cell-sequencing
2
single-cell-multiomics
2
data-analysis
2
dimensionality-reduction
2
scrnaseq
2
visualization
2
image-analysis
2
machine-learning
2
scrna-seq-analysis
2
life-sciences
1
computation-biology
1
system-biology
1
scrna-seq
1
feature-selection
1
image analysis
1
multiplex imaging
1
rnaseq
1
atacseq
1
transcriptomics
1
scRNAseq
1
pathway-analysis
1
deep-generative-model
1
pip
1
optimal-transport
1
cca
1
single-cell-crispr-screening
1
spatial-data
1
graph-neural-networks
1
precision-medicine
1
cell-type-specific-gene-expression-analysis
1
cell-composition-analysis
1
outliers
1
outlier-detection
1
mass-cytometry
1
single-cell-data
1
biotech
1
single cell RNA sequencing
1
genotype learning
1
demultiplexing
1
bayesian modelling
1
microscopy-image-analysis
1
refractive-index
1
quantitative-phase-imaging
1
phython
1
microscopy
1
holography
1
digital-holographic-microscopy
1
scattering
1
refractive index
1
quantitative phase imaging
1
optics
1
digital holographic microscopy
1
pypi
1
single cell analysis
1
dropout
1
denoising
1
randomly
1
user-interface
1
toolkit
1
place-cells
1
neuroscience
1
lfp-analysis
1
tumor-microenvironment
1
clinical-workflow
1
biomarker-discovery
1
way-lab
1
cellprofiler
1
plot
1
pandas
1
matplotlib
1
data-visualization-python
1
complexheatmap
1
complex-heatmaps
1
clustermap
1
heatmap
1
ComplexHeatmap
1
semi-supervised-learning
1
spatial-omics
1
graph-neural-network
1
non-linear-model
1
trajectory-prediction
1
trajectory-analysis
1
principal-component-analysis
1
data-visualization
1