Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "BAM" keyword
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.6 versions - Latest release: 10 months ago - 1 dependent repositories - 43 downloads last month - 10 stars on GitHub - 3 maintainers
ngsequtils 1.2.1
Some utility scripts for handling Next Generation Sequencing data and for working with wig/bigwig...4 versions - Latest release: over 10 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
bamnostic 1.1.10
Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool54 versions - Latest release: about 1 year ago - 3 dependent packages - 1 dependent repositories - 643 downloads last month - 94 stars on GitHub - 1 maintainer
bamqc 0.6.5
Quality control tools for NGS alignment file4 versions - Latest release: over 8 years ago - 34 downloads last month - 7 stars on GitHub - 1 maintainer
scbamtools 0.5
High performance Cython + Python tools to process BAM files with tags as they arise in single-cel...4 versions - Latest release: 3 months ago - 21 downloads last month - 1 stars on GitHub - 1 maintainer
connor 0.6.1
Command-line tool to deduplicate reads in bam files based on custom inline barcoding.5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 40 downloads last month - 21 stars on GitHub - 1 maintainer
zither 0.2
Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, wri...1 version - Latest release: almost 9 years ago - 2 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
15 versions - Latest release: over 1 year ago - 7 dependent repositories - 641 downloads last month - 621 stars on GitHub - 1 maintainer
htsget 0.2.6
Python API and command line interface for the GA4GH htsget API.15 versions - Latest release: over 1 year ago - 7 dependent repositories - 641 downloads last month - 621 stars on GitHub - 1 maintainer
katana 0.1.2
Command-line tool to soft-clip reads based on primer locations.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 171 downloads last month - 5 stars on GitHub - 1 maintainer
fusionvet 1.0.1
A bioinformatics tool to visualize and evaluate *known* gene fusions1 version - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 1 maintainer
ezbamqc 0.6.7
Quality control tools for NGS alignment file3 versions - Latest release: about 8 years ago - 1 dependent repositories - 21 downloads last month - 7 stars on GitHub - 2 maintainers
Related Keywords
CRAM
3
bioinformatic
3
exome-seq
3
DNA-seq
3
SAM
2
file
2
control
2
Quality
2
genetics
2
biology
1
gene expression
1
VCF
1
variant-call-format
1
htsget
1
gene fusion
1
validation
1
visualization
1
UCSC
1
bed
1
bigBed
1
interact
1
bigInteract
1
cell barcode
1
single cell
1
bioinformatics
1
struct
1
genomics
1
pysam
1
gff
1
bigwig
1
wig
1
Sequencing
1
Generation
1
Next
1
alignment
1
SARS-CoV-2
1
HIV-1
1
NGS
1