pypi.org "bed" keyword
View the packages on the pypi.org package registry that are tagged with the "bed" keyword.
vcf2variants 1.3
A python tool to convert vcf to varda variant files.7 versions - Latest release: about 1 year ago - 1 dependent repositories - 146 downloads last month - 3 stars on GitHub - 1 maintainer
pygvcf2coverage 0.2
A python tool to extract coverage from gvcf files.2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 52 downloads last month - 3 stars on GitHub - 1 maintainer
ntai 1.0.0
Nucleotide A.I.20 versions - Latest release: over 3 years ago - 1 dependent repositories - 715 downloads last month - 0 stars on gitlab.com - 1 maintainer
prooverlap 0.1.2
Assessing feature proximity/overlap and testing statistical significance from genomic intervals3 versions - Latest release: 3 days ago - 0 stars on GitHub - 1 maintainer
bedpy 0.0.5
Making bed files computable5 versions - Latest release: over 5 years ago - 1 dependent repositories - 208 downloads last month - 0 stars on gitlab.com - 1 maintainer
bed-lookup 0.1.0
Lookup a gene by coordinate from a bed6 versions - Latest release: about 2 years ago - 287 downloads last month - 3 stars on GitHub - 1 maintainer
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: over 1 year ago - 198 downloads last month - 37,327 stars on GitHub - 2 maintainers
Top 3.8% on pypi.org
30 versions - Latest release: 11 days ago - 8 dependent packages - 5 dependent repositories - 5.48 thousand downloads last month - 170 stars on GitHub - 3 maintainers
bioframe 0.8.0
Operations and utilities for Genomic Interval Dataframes.30 versions - Latest release: 11 days ago - 8 dependent packages - 5 dependent repositories - 5.48 thousand downloads last month - 170 stars on GitHub - 3 maintainers
glabtop2-py 2.1.1
GlabTop2 (Glacier bed Topography) model8 versions - Latest release: 5 months ago - 1 dependent repositories - 184 downloads last month - 12 stars on GitHub - 1 maintainer
soda-gallery 1.2.0
Python-based UCSC genome browser gallery generator3 versions - Latest release: about 1 year ago - 1 dependent repositories - 109 downloads last month - 12 stars on GitHub - 1 maintainer
python-bed-lookup 0.1.0
Rapid lookups by coordinate from a bed file1 version - Latest release: about 2 years ago - 55 downloads last month - 3 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: over 1 year ago - 209 downloads last month - 1 maintainer
stabix 2.0.0
S(tatistical)tabix2 versions - Latest release: 12 days ago - 87 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
3 versions - Latest release: over 5 years ago - 1 dependent package - 15 dependent repositories - 29.2 thousand downloads last month - 6 stars on GitHub - 1 maintainer
deeptoolsintervals 0.1.9
A python module creating/accessing GTF-based interval trees with associated meta-data3 versions - Latest release: over 5 years ago - 1 dependent package - 15 dependent repositories - 29.2 thousand downloads last month - 6 stars on GitHub - 1 maintainer
fuc 0.38.0 💰
Frequently used commands in bioinformatics39 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 3.23 thousand downloads last month - 48 stars on GitHub - 1 maintainer
bedspec 0.6.0
An HTS-specs compliant BED toolkit.6 versions - Latest release: 5 months ago - 373 downloads last month - 0 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: about 5 years ago - 1 dependent repositories - 349 downloads last month - 319 stars on GitHub - 2 maintainers
gpseqc 2.3.6
GPSeq-based centrality estimation.4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 3 years ago - 1 dependent repositories - 698 downloads last month - 45 stars on GitHub - 1 maintainer
plink-bed-reader 1.0.2
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and indiv...3 versions - Latest release: about 2 months ago - 248 downloads last month - 2 stars on GitHub - 1 maintainer
giteebed 1.0.1
A image bed based on gitee1 version - Latest release: about 4 years ago - 1 dependent repositories - 59 downloads last month - 3 stars on GitHub - 1 maintainer
exoclasma-index 0.9.5
Reference Sequence and Capture Intervals Preparation for ExoClasma Suite2 versions - Latest release: over 2 years ago - 76 downloads last month - 0 stars on GitHub - 1 maintainer
fusionvet 1.0.1
A bioinformatics tool to visualize and evaluate *known* gene fusions1 version - Latest release: over 5 years ago - 1 dependent repositories - 41 downloads last month - 1 maintainer
typora-upload-image 0.1.7 removed
A package that can upload images to the image bed in Typora.17 versions - Latest release: about 4 years ago - 25 downloads last month - 11 stars on GitHub
Related Keywords
bioinformatics
10
genomics
6
ngs
5
fasta
5
python
5
gtf
4
visualization
3
genome
3
vcf
3
image
2
genetics
2
bam
2
sam
2
GTF
2
BED
2
biology
2
gene
2
coverage
2
gvcf
2
sequencing
2
epigenomics
2
sequence
2
genomic-intervals
2
pypi
2
centrality
1
nucleus
1
region
1
genome-architecture
1
gpseq
1
nuclear-architecture
1
timg
1
nuclear-centrality
1
picture-bed
1
image-bed
1
bigInteract
1
cell
1
DNA
1
snps
1
medical
1
genomes
1
genome-sequencing
1
genome-browser
1
genome-annotation
1
ensembl
1
csv-parser
1
cancer-genomics
1
cancer-genomes
1
cancer
1
protein
1
interact
1
bigBed
1
BAM
1
UCSC
1
validation
1
gene fusion
1
restrictase
1
indexing
1
gitee
1
on
1
based
1
typora
1
A
1
genotype
1
snv
1
indel
1
variant
1
plink
1
tts
1
tss
1
transcript
1
splicing
1
rna-seq
1
intron
1
genomic
1
exon
1
dna-sequences
1
chip-seq
1
cds
1
bigwig
1
upload
1
model
1
Topography
1
Glacier
1
GlabTop2
1
spatial-join
1
numpy
1
ngs-analysis
1
genomic-ranges
1
dataframes
1
viewframe
1
pandas
1
interval operations
1
genomic ranges
1
dataframe
1
bedtools
1
bedframe
1
yapf
1
pre-commit-hook
1
hacktoberfest
1
gofmt
1