Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "single cell" keyword
methscan 1.0.0
command line tool for the analysis of single-cell bisulfite-sequencing data1 version - Latest release: 3 months ago - 40 downloads last month - 2 stars on GitHub - 1 maintainer
sceleto2 1.1.2
sceleto2 is a wrapper package developed by SCMGL to aid in single cell analysis.7 versions - Latest release: almost 2 years ago - 23 downloads last month - 1 maintainer
tasccoda 0.1.3
Tree-aggregated compositional analysis for high-throughput sequencing data4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 28 downloads last month - 8 stars on GitHub - 1 maintainer
coscst 0.1
Single-cell RNA sequencing data excels in providing high sequencing depth and precision at the si...1 version - Latest release: 2 months ago - 242 downloads last month - 1 maintainer
cospar 0.3.3
CoSpar: integrating state and lineage information for dynamic inference25 versions - Latest release: 8 months ago - 2 dependent packages - 1 dependent repositories - 47 downloads last month - 7 stars on GitHub - 1 maintainer
beaconet 1.0.9
A reference-free method for integration of multiple batches of scRNA-seq data.6 versions - Latest release: 3 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
sceleto 0.9.8
Tool to aid in single cell analysis (temporary description)10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 65 downloads last month - 1 maintainer
scphylo-tools 0.0.4
a python toolkit for single-cell tumor phylogenetic analysis5 versions - Latest release: 11 months ago - 1 dependent repositories - 105 downloads last month - 5 stars on GitHub - 1 maintainer
scrfe 1.5.6
Single-cell identity definition using one vs all random forest classification and recursive featu...19 versions - Latest release: almost 4 years ago - 1 dependent repositories - 49 downloads last month - 12 stars on GitHub - 1 maintainer
atlasapprox 0.2.0
Cell atlas approximations, Python API3 versions - Latest release: 7 months ago - 30 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
11 versions - Latest release: 2 months ago - 4 dependent packages - 5 dependent repositories - 8.24 thousand downloads last month - 274 stars on GitHub - 1 maintainer
scib 1.1.5
Evaluating single-cell data integration methods11 versions - Latest release: 2 months ago - 4 dependent packages - 5 dependent repositories - 8.24 thousand downloads last month - 274 stars on GitHub - 1 maintainer
trisicell 0.2.3
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data26 versions - Latest release: 5 months ago - 1 dependent repositories - 814 downloads last month - 10 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
10 versions - Latest release: over 3 years ago - 5 dependent repositories - 363 downloads last month - 110 stars on GitHub - 1 maintainer
flowcytometrytools 0.5.1
A python package for performing flow cytometry analysis10 versions - Latest release: over 3 years ago - 5 dependent repositories - 363 downloads last month - 110 stars on GitHub - 1 maintainer
entrain 0.0.79
A single-cell analysis package to elucidate environmental factors controlling cell differentiatio...16 versions - Latest release: 7 months ago - 75 downloads last month - 1 maintainer
numpy-reduced-flowcytometrytools 0.5.0
A python package for performing flow cytometry analysis1 version - Latest release: about 4 years ago - 1 dependent repositories - 10 downloads last month - 110 stars on GitHub - 1 maintainer
scpram 0.0.2
scPRAM accurately predicts single-cell gene expression perturbation response based on attention m...3 versions - Latest release: 6 months ago - 16 downloads last month - 2 stars on GitHub - 1 maintainer
scbs 0.6.8
command line tool for the analysis of single-cell bisulfite-sequencing data13 versions - Latest release: 3 months ago - 43 downloads last month - 10 stars on GitHub - 1 maintainer
scbamtools 0.5
High performance Cython + Python tools to process BAM files with tags as they arise in single-cel...4 versions - Latest release: 3 months ago - 21 downloads last month - 1 stars on GitHub - 1 maintainer
sccoda 0.1.9
A Dirichlet-Multinomial approach to identify compositional changes in count data.11 versions - Latest release: over 1 year ago - 1 dependent repositories - 280 downloads last month - 117 stars on GitHub - 1 maintainer
nabo 0.4.1
Python library to perform memory efficient cross-sample cell mapping using single cell transcipto...6 versions - Latest release: over 3 years ago - 1 dependent repositories - 60 downloads last month - 3 stars on GitHub - 1 maintainer
ocelli 0.1.1
Single-cell developmental landscapes from multimodal data2 versions - Latest release: about 1 year ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
genes2genes 0.2.0
A tool for aligning gene expression trajectories of single-cell reference and query systems1 version - Latest release: about 2 months ago - 186 downloads last month - 17 stars on GitHub - 1 maintainer
scbutterfly 0.0.8
A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders8 versions - Latest release: about 2 months ago - 71 downloads last month - 12 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
33 versions - Latest release: 3 months ago - 28 dependent packages - 34 dependent repositories - 7.55 thousand downloads last month - 388 stars on GitHub - 2 maintainers
scvelo 0.3.2
RNA velocity generalized through dynamical modeling33 versions - Latest release: 3 months ago - 28 dependent packages - 34 dependent repositories - 7.55 thousand downloads last month - 388 stars on GitHub - 2 maintainers
hiscanner 0.2a0
High-resolution copy number variant calling in single-cell whole-genome sequencing.2 versions - Latest release: about 2 months ago - 1 dependent package - 87 downloads last month - 0 stars on GitHub - 1 maintainer
brooklyn-plot 0.0.4
Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus R...4 versions - Latest release: 7 months ago - 47 downloads last month - 0 stars on GitHub - 1 maintainer
dspin 1.0.11
Regulatory network models from single-cell perturbation profiling16 versions - Latest release: about 2 months ago - 151 downloads last month - 8 stars on GitHub - 2 maintainers
topicvelo 0.0.2
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems2 versions - Latest release: 6 months ago - 39 downloads last month - 12 stars on GitHub - 1 maintainer
entrain-spatial 0.0.1
A single-cell analysis package to elucidate environmental factors controlling cell differentiatio...1 version - Latest release: 12 months ago - 3 downloads last month - 1 maintainer
scdb 0.0.1
single cell database utilities1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
onclass 0.4.1
Single Cell Annotation based on the Cell Ontology23 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 331 downloads last month - 46 stars on GitHub - 2 maintainers
sclive 0.0.0.1
Single cell analysis plotting functions with interactive and web development friendly outputs.1 version - Latest release: 5 months ago - 5 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
8
transcriptomics
6
RNA
5
single-cell
5
biology
4
velocity
4
scRNA-seq
3
differentiation
3
scrna-seq
3
algorithms
2
cancer
2
evolution
2
phylogenetics
2
pip
2
python
2
single-cell-rna-seq
2
stochastic
2
rna-seq
2
flow cytometry
2
data analysis
2
cytometry
2
ligand
2
receptor
2
methylation
2
tumor phylogeny
2
single cell bisulfite sequencing
2
transcriptional bursting
2
sceleto
2
composition
2
CODA
2
compositional analysis
2
tensorflow
2
shared nearest neighbors
1
knn
1
dual-aligned variational autoencoder
1
cross-modality translation
1
trajectory-alignment
1
pseudotime-trajectory
1
minimum-message-length
1
snn
1
mapping
1
human-cell-atlas
1
dynamic-programming
1
bayesian-inference
1
developmental process
1
multimodal
1
multiomics
1
dynamic programming
1
trajectory alignment
1
plotting
1
html
1
OnClass
1
terra
1
topic modeling
1
network inference
1
sn-RNAseq
1
sc-RNAseq
1
co-expression
1
bioinformatics tools
1
RNA-seq
1
cellxgene
1
RNA analysis
1
single nucleus-RNA
1
single cell-RNA
1
single nucleus
1
brooklyn
1
CNA
1
CNV
1
genomics
1
dynamical
1
sequencing
1
data integration
1
benchmarking
1
omics
1
cell atlas
1
sc-rna-seq
1
random-forest
1
machine-learning
1
data-science
1
scRFE
1
computational-biology
1
tools
1
reference-free
1
multiple sources
1
batch effect
1
lineage tracing
1
dynamic inference
1
spatial transcriptome
1
MCMC
1
tree aggregation
1
microbiome
1
cell alignment
1
graph
1
analysis
1
scRNA-Seq
1
statistical-analysis
1
compositional-changes
1
gene expression
1
cell barcode
1
genetics
1