Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "gff" keyword
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics25 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 607 downloads last month - 232 stars on GitHub - 1 maintainer
ngsequtils 1.2.1
Some utility scripts for handling Next Generation Sequencing data and for working with wig/bigwig...4 versions - Latest release: over 10 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
bioino 0.0.2
Lightweight IO and conversion for bioinformatics file formats.4 versions - Latest release: 3 months ago - 1 dependent package - 47 downloads last month - 0 stars on GitHub - 1 maintainer
mirtop 0.4.23
Small RNA-seq annotation56 versions - Latest release: over 4 years ago - 1 dependent package - 2 dependent repositories - 234 downloads last month - 18 stars on GitHub - 1 maintainer
gff-io 0.0.2
GFF file reader/writer2 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 121 downloads last month - 0 stars on GitHub - 1 maintainer
gff2json 0.1.0
convert gff files to json1 version - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
feature-merge 1.3.0
Merge overlapping features of GFF/GTF files.7 versions - Latest release: over 3 years ago - 1 dependent repositories - 34 downloads last month - 0 stars on GitHub - 2 maintainers
gtfast 0.0.3
GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 25 downloads last month - 2 stars on GitHub - 1 maintainer
shangyu-pypi 0.0.4
Python programs for processing GFF3 files4 versions - Latest release: about 3 years ago - 1 dependent repositories - 16 downloads last month - 81 stars on GitHub - 1 maintainer
pyreference 0.7.5
Library for working with reference genomes and gene GTF/GFFs12 versions - Latest release: 11 months ago - 1 dependent repositories - 70 downloads last month - 4 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 1 maintainer
edge-genome 3.28.2
Genome Engineering Tool68 versions - Latest release: over 1 year ago - 1 dependent repositories - 120 downloads last month - 38 stars on GitHub - 1 maintainer
cpt-gffparser 1.2.2
A Biopython extension package for I/O of GFF files12 versions - Latest release: about 2 years ago - 48 downloads last month - 4 stars on GitHub - 1 maintainer
collect-columns 1.0.0
Retrieve a column for each in a set of tables, placing them in a single output table.3 versions - Latest release: over 3 years ago - 1 dependent repositories - 34 downloads last month - 1 stars on GitHub - 2 maintainers
gff3tool 2.1.0
Python programs for processing GFF3 files11 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 121 downloads last month - 81 stars on GitHub - 7 maintainers
anngtf 0.0.11
anngtf - lift annotations from a `.gtf` file to your AnnData object.3 versions - Latest release: about 2 years ago - 32 downloads last month - 2 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 2 years ago - 39 downloads last month - 3 stars on GitHub - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 633 downloads last month - 44 stars on GitHub - 1 maintainer
storf-reporter 1.3.4
StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-S...42 versions - Latest release: 3 months ago - 1 dependent repositories - 224 downloads last month - 15 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
11
gff3
5
gtf
5
fasta
5
genomics
4
python
4
fastq
2
biopython
2
genome
2
gff3-format
2
single-cell
2
gencode
2
anndata
2
convert
2
io
2
biology
2
genbank
2
microbiology
2
visualization
2
wig
1
metagenomic-pipeline
1
edge
1
annotate
1
track
1
query
1
django
1
database
1
ginkgo
1
genome-annotation
1
ncbi-blast
1
prefix-tree
1
primer
1
csv
1
rna-seq
1
tsv
1
embl
1
filter
1
matplotlib
1
api
1
bam
1
bed
1
cli
1
cram
1
maf
1
sam
1
vcf
1
genomes
1
orfs
1
bigwig
1
BAM
1
science
1
Sequencing
1
Generation
1
sequencing
1
RNA-seq
1
miRNA
1
isomiRs
1
annotation
1
formatter
1
isomirs
1
mirna
1
smallrna-seq
1
reader
1
json
1
Next
1
format
1
merge
1
features
1
overlap
1
synteny
1
microbial-genomics
1
genomics-visualization
1
comparative-genomics
1
genes
1
metagenomics
1
library
1
snps
1