pypi.org "SBML" keyword
sbmlutils 0.16.0
sbmlutils are python utilities for working with SBML.76 versions - Latest release: 4 days ago - 1 dependent package - 3 dependent repositories - 2.27 thousand downloads last month - 42 stars on GitHub - 1 maintainer
yaml2sbml 0.2.5
A small package to convert ODEs specified in a YAML file to SBML/PEtab6 versions - Latest release: about 5 years ago - 1 dependent package - 1 dependent repositories - 62 downloads last month - 13 stars on GitHub - 1 maintainer
tabularqual 0.1.6
Converter for logical models: spreadsheets (XLSX, CSV) <--> SBML-qual.4 versions - Latest release: 3 months ago - 106 downloads last month - 7 stars on GitHub - 1 maintainer
pybnf 1.8.1
An application for parallel fitting of BioNetGen and SBML models using metaheuristics22 versions - Latest release: about 2 months ago - 1 dependent repositories - 133 downloads last month - 25 stars on GitHub - 5 maintainers
sbmlsim 0.8.5
sbmlsim are python utilities for the simulation of SBML models.28 versions - Latest release: 2 days ago - 1 dependent repositories - 942 downloads last month - 12 stars on GitHub - 1 maintainer
llrq 0.0.3
Log-Linear Reaction Quotient Dynamics: Tractable framework for chemical reaction networks3 versions - Latest release: about 1 year ago - 26 downloads last month - 2 stars on GitHub - 1 maintainer
f2xba 1.10.0
f2xba modelling framework: from FBA to extended genome-scale modelling10 versions - Latest release: about 1 month ago - 223 downloads last month - 5 stars on GitHub - 1 maintainer
simbio 1.2.0
A Python-based package for simulation of Chemical Reaction Networks (CRNs).18 versions - Latest release: about 1 month ago - 2 dependent packages - 3 dependent repositories - 371 downloads last month - 8 stars on GitHub - 1 maintainer
bioscrape 1.4.1
Biological Stochastic Simulation of Single Cell Reactions and Parameter Estimation12 versions - Latest release: about 2 months ago - 1 dependent repositories - 505 downloads last month - 30 stars on GitHub - 3 maintainers
biocrnpyler 1.3.4
A chemical reaction network compiler for generating large biological circuit models15 versions - Latest release: about 2 months ago - 1 dependent repositories - 177 downloads last month - 55 stars on GitHub - 6 maintainers
kisao 2.34 💰
Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO)21 versions - Latest release: over 2 years ago - 5 dependent packages - 20 dependent repositories - 2.35 thousand downloads last month - 12 stars on GitHub - 2 maintainers
sbml2dae 0.1.7
A customizable SBML to Matlab parser4 versions - Latest release: almost 4 years ago - 1 dependent package - 6 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
mobspy 3.0.0
A Query-Based Language for Chemical Reaction Networks35 versions - Latest release: 24 days ago - 1 dependent repositories - 331 downloads last month - 25 stars on GitHub - 3 maintainers
libsbmlnetwork 0.5.12
LibSBML Network Python API33 versions - Latest release: about 1 year ago - 2 dependent packages - 360 downloads last month - 1 maintainer
libsbne 0.0.6
LibSBNE Python API5 versions - Latest release: about 3 years ago - 1 dependent package - 61 downloads last month - 1 stars on GitHub - 1 maintainer
libsbmlnetworkeditor 0.0.14
LibSBML Network Editor Python API13 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 133 downloads last month - 1 maintainer
biomodels 0.3.2
Download from the BioModels API5 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 1.14 thousand downloads last month - 2 stars on GitHub - 1 maintainer
biosimulators-xpp 0.0.13
BioSimulators-compliant command-line interface to the XPP simulation program.13 versions - Latest release: over 4 years ago - 3 dependent repositories - 99 downloads last month - 0 stars on GitHub - 2 maintainers
onemodel-cli 0.1.0
A command-line interface for OneModel1 version - Latest release: over 4 years ago - 2 dependent repositories - 222 downloads last month - 0 stars on GitHub - 1 maintainer
onemodel-gui 0.1.0
A graphical user interface for OneModel1 version - Latest release: over 4 years ago - 258 downloads last month - 0 stars on GitHub - 1 maintainer
biosimulators-amici 0.1.30
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.co...32 versions - Latest release: 10 months ago - 2 dependent repositories - 109 downloads last month - 3 stars on GitHub - 2 maintainers
augusta 1.0.7
Python package for inference of the gene regulatory network and the boolean network using RNA-Seq...9 versions - Latest release: over 1 year ago - 36 downloads last month - 3 stars on GitHub - 1 maintainer
biosimulators-pysces 0.1.33
BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.so...31 versions - Latest release: almost 2 years ago - 2 dependent repositories - 147 downloads last month - 2 stars on GitHub - 2 maintainers
autoreduce 0.3.1
Python based automated model reduction tools for SBML models7 versions - Latest release: over 1 year ago - 1 dependent repositories - 179 downloads last month - 4 stars on GitHub - 1 maintainer
biosimulators-cbmpy 0.1.15
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sour...16 versions - Latest release: over 4 years ago - 3 dependent repositories - 169 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: over 4 years ago - 1 dependent repositories - 210 downloads last month - 1 stars on GitHub - 4 maintainers
fbc-curation 0.3.2
FBC reference files for SBML model curation.14 versions - Latest release: 12 months ago - 1 dependent repositories - 60 downloads last month - 8 stars on GitHub - 1 maintainer
biosimulators-ginsim 0.0.9
BioSimulators-compliant command-line interface to the GINsim simulation program.9 versions - Latest release: almost 5 years ago - 2 dependent repositories - 178 downloads last month - 0 stars on GitHub - 3 maintainers
qualitativemodelfitting 0.0.4
3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 132 downloads last month - 0 stars on GitHub - 1 maintainermod_sbml 0.2.3
Utilities for working with metabolic models in SBML format.3 versions - Latest release: over 9 years ago - 5 dependent repositories - 49 downloads last month - 3 stars on GitHub - 1 maintainer
sbmlxdf 1.0.3
convert between SBML and tabular structures14 versions - Latest release: over 1 year ago - 1 dependent repositories - 114 downloads last month - 0 stars on gitlab.cs.uni-duesseldorf.de - 1 maintainer
ode2sbml 0.1.3
Convert Python ODE systems to SBML (Level 3 Version 2) and PEtab bundles3 versions - Latest release: 5 months ago - 39 downloads last month - 1 maintainer
biosimulators-libsbmlsim 0.0.6
BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/...6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 44 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.4 versions - Latest release: almost 5 years ago - 3 dependent repositories - 82 downloads last month - 0 stars on GitHub - 2 maintainers
sb2l 0.1.3
sb2l Translates the biological models written in SBML into LaTeX code to be compiled and read by ...2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 45 downloads last month - 1 stars on GitHub - 1 maintainer
antimonycombinations 0.0.3
3 versions - Latest release: almost 7 years ago - 37 downloads last month - 0 stars on GitHub - 1 maintainersubsbml 0.9.0
SBML subsystem interaction modeling toolbox in Python1 version - Latest release: almost 6 years ago - 1 dependent repositories - 20 downloads last month - 5 stars on GitHub - 1 maintainer
biosimulators-boolnet 0.1.18
BioSimulators-compliant command-line interface to the BoolNet simulation program.19 versions - Latest release: almost 5 years ago - 2 dependent repositories - 326 downloads last month - 0 stars on GitHub - 2 maintainers
stochmod 0.1.0
Constrained tau-leap-like stochastic simulator for SBML models1 version - Latest release: 3 months ago - 1 maintainer
shapcrn 0.1.1
SBML reaction-network analysis with simulation, perturbation, and Shapley-style workflows.2 versions - Latest release: 3 months ago - 0 stars on GitHub - 1 maintainer
cno 0.1.4
CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation ...5 versions - Latest release: over 10 years ago - 2 dependent repositories - 95 downloads last month - 10 stars on GitHub - 1 maintainer
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