pypi.org "cell-biology" keyword
View the packages on the pypi.org package registry that are tagged with the "cell-biology" keyword.
Top 1.8% on pypi.org
84 versions - Latest release: 2 months ago - 43 dependent packages - 58 dependent repositories - 32.4 thousand downloads last month - 1,568 stars on GitHub - 2 maintainers
cellpose 3.1.1
anatomical segmentation algorithm84 versions - Latest release: 2 months ago - 43 dependent packages - 58 dependent repositories - 32.4 thousand downloads last month - 1,568 stars on GitHub - 2 maintainers
deepliif 1.1.11
DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quant...10 versions - Latest release: 10 months ago - 1 dependent repositories - 424 downloads last month - 189 stars on GitHub - 2 maintainers
cello-classify 2.1.1
CellO7 versions - Latest release: almost 2 years ago - 2 dependent repositories - 322 downloads last month - 60 stars on GitHub - 1 maintainer
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.4 versions - Latest release: over 3 years ago - 3 dependent repositories - 158 downloads last month - 0 stars on GitHub - 2 maintainers
cellgeometry 0.1.2
Statistical Cell Shape Analysis3 versions - Latest release: almost 2 years ago - 162 downloads last month - 2 stars on GitHub - 1 maintainer
wc-lang 0.0.1
Language for describing whole-cell models1 version - Latest release: over 1 year ago - 1 dependent repositories - 8 stars on GitHub - 2 maintainers
u-segment3d 0.1.0
Generate consensus 3D segmentation from 2D segmented stacks1 version - Latest release: about 2 months ago - 88 downloads last month - 12 stars on GitHub - 1 maintainer
turing-segment 0.3.7
BioTuring cell segmentation inference framework8 versions - Latest release: 25 days ago - 1.27 thousand downloads last month - 1,368 stars on GitHub - 1 maintainer
cellpose-vollseg 0.0.3
modification of cellpose algorithm3 versions - Latest release: about 2 years ago - 1 dependent package - 159 downloads last month - 1,310 stars on GitHub - 1 maintainer
efficientbioai 0.0.6
efficientbioai is a python package for efficient deep learning in bioimaging2 versions - Latest release: almost 2 years ago - 89 downloads last month - 1,310 stars on GitHub - 1 maintainer
actk 0.2.2
Automated Cell Toolkit6 versions - Latest release: over 4 years ago - 362 downloads last month - 24 stars on GitHub - 1 maintainer
cellshape 0.0.31
3D shape analysis using deep learning41 versions - Latest release: almost 2 years ago - 1.48 thousand downloads last month - 24 stars on GitHub - 2 maintainers
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: almost 3 years ago - 56 downloads last month - 5 stars on GitHub - 1 maintainer
cytoskeleton-analyser 1.6.5
Examines simulated cell microtubules1 version - Latest release: almost 4 years ago - 1 dependent repositories - 50 downloads last month - 0 stars on GitHub - 1 maintainer
fluospotter 0.2
Python library designed for nuclei segmentation and puncta detection in fluorescence microscopy i...2 versions - Latest release: 10 months ago - 89 downloads last month - 2 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
35 versions - Latest release: 8 months ago - 3 dependent packages - 7 dependent repositories - 1.28 thousand downloads last month - 445 stars on GitHub - 1 maintainer
deepcell 0.12.10
Deep learning for single cell image segmentation35 versions - Latest release: 8 months ago - 3 dependent packages - 7 dependent repositories - 1.28 thousand downloads last month - 445 stars on GitHub - 1 maintainer
deepcelltl 0.12.5
Deep learning for single cell image segmentation3 versions - Latest release: over 2 years ago - 126 downloads last month - 445 stars on GitHub - 1 maintainer
deepcell-cpu 0.12.10
Deep learning for single cell image segmentation31 versions - Latest release: 8 months ago - 1 dependent repositories - 599 downloads last month - 445 stars on GitHub - 1 maintainer
epitools 0.0.13
Quantifying 2D cell shape and epithelial tissue dynamics13 versions - Latest release: 3 months ago - 444 downloads last month - 6 stars on GitHub - 1 maintainer
wc-rules 0.0.1
Language for describing whole-cell models1 version - Latest release: over 1 year ago - 1 dependent repositories - 9 stars on GitHub - 2 maintainers
wc-model-gen 0.0.1
Framework for systematically and scalably designing whole-cell models from large datasets such as...1 version - Latest release: over 1 year ago - 1 dependent repositories - 5 stars on GitHub - 2 maintainers
optiflow 1.1.1
Reconstruction of flows from kymographs with optimal transport3 versions - Latest release: about 2 years ago - 113 downloads last month - 4 stars on GitHub - 1 maintainer
cytounet 0.2.2
Deep Learning based Cell Segmentation4 versions - Latest release: about 3 years ago - 1 dependent repositories - 114 downloads last month - 6 stars on GitHub - 1 maintainer
cellseg 0.0.0
Multiclass Cell Segmentation1 version - Latest release: about 4 years ago - 1 dependent repositories - 38 downloads last month - 6 stars on GitHub - 1 maintainer
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 3 years ago - 1 dependent repositories - 178 downloads last month - 1 stars on GitHub - 2 maintainers
cellsepi 0.4.1
Segmentation of microscopy images and data analysis pipeline with a graphical user interface, pow...6 versions - Latest release: about 2 months ago - 521 downloads last month - 1 stars on GitHub - 4 maintainers
Related Keywords
segmentation
10
cell-segmentation
9
biology
8
deep-learning
8
computational-biology
5
systems-biology
5
computational biology
4
tensorflow
4
image-segmentation
4
image-processing
4
systems
3
whole-cell-modeling
3
image-analysis
3
whole-cell
3
instance-segmentation
3
cell
3
SBML
2
numerical simulation
2
sed-ml
2
systems biology
2
biosimulators
2
combine
2
images
2
annotations
2
convolutional-neural-networks
2
machine-learning
2
dataset
2
omex
2
bioinformatics
2
image-segmentation-tensorflow
2
keras-tensorflow
2
pypi
2
python3
2
unet-tensorflow
2
pytorch
2
python
2
microscopy
2
napari
1
tissue
1
shape
1
napari-plugin
1
vesicles
1
cytoskeleton
1
mechanics
1
data analysis
1
data-analysis
1
simulations
1
3d-volume
1
u-net
1
diffraction-limited-spots
1
microscopy-images
1
spot-detection
1
cellsegmentation
1
cellpose-segmentation
1
cellpose
1
sbml
1
flux-balance-analysis
1
fba
1
biosimulations
1
bigg
1
BiGG
1
Systems Biology Markup Language
1
FBA
1
flux balance analysis
1
mathematical modeling
1
cell biology
1
biochemical network
1
metabolism
1
torch
1
keras
1
optimal-transport
1
inverse-problems
1
dynamical-modeling
1
computational
1
rule-based-modeling
1
kinetic-modeling
1
image-projections
1
epithelial-tissue
1
cell-shape
1
topology
1
reaction network
1
single-cell-rna-seq
1
rna-seq
1
ontologies
1
cell-type-classification
1
gene-expression
1
cell-ontology
1
cell-type
1
scRNA-seq
1
whole-slide-imaging
1
super-resolution
1
stitching
1
pathology-image
1
pathology-gan
1
pathology
1
multitask-learning
1
multiplex
1
immunohistochemistry
1
immunohistochemical-images
1
digital-pathology
1