Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cell-biology" keyword
Top 1.8% on pypi.org
78 versions - Latest release: 14 days ago - 43 dependent packages - 58 dependent repositories - 29.3 thousand downloads last month - 1,042 stars on GitHub - 2 maintainers
cellpose 3.0.8
anatomical segmentation algorithm78 versions - Latest release: 14 days ago - 43 dependent packages - 58 dependent repositories - 29.3 thousand downloads last month - 1,042 stars on GitHub - 2 maintainers
efficientbioai 0.0.6
efficientbioai is a python package for efficient deep learning in bioimaging2 versions - Latest release: about 1 year ago - 18 downloads last month - 1,155 stars on GitHub - 1 maintainer
cellpose-vollseg 0.0.3
modification of cellpose algorithm3 versions - Latest release: over 1 year ago - 1 dependent package - 75 downloads last month - 1,201 stars on GitHub - 1 maintainer
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: almost 2 years ago - 25 downloads last month - 4 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
34 versions - Latest release: 9 months ago - 3 dependent packages - 7 dependent repositories - 1.72 thousand downloads last month - 369 stars on GitHub - 1 maintainer
deepcell 0.12.9
Deep learning for single cell image segmentation34 versions - Latest release: 9 months ago - 3 dependent packages - 7 dependent repositories - 1.72 thousand downloads last month - 369 stars on GitHub - 1 maintainer
cellgeometry 0.1.2
Statistical Cell Shape Analysis3 versions - Latest release: about 1 year ago - 39 downloads last month - 1 stars on GitHub - 1 maintainer
epitools 0.0.12
Quantifying 2D cell shape and epithelial tissue dynamics12 versions - Latest release: 9 months ago - 162 downloads last month - 6 stars on GitHub - 1 maintainer
deepcelltl 0.12.5
Deep learning for single cell image segmentation3 versions - Latest release: over 1 year ago - 46 downloads last month - 369 stars on GitHub - 1 maintainer
optiflow 1.1.1
Reconstruction of flows from kymographs with optimal transport3 versions - Latest release: over 1 year ago - 36 downloads last month - 4 stars on GitHub - 1 maintainer
wc-rules 0.0.1
Language for describing whole-cell models1 version - Latest release: 9 months ago - 1 dependent repositories - 9 stars on GitHub - 2 maintainers
wc-model-gen 0.0.1
Framework for systematically and scalably designing whole-cell models from large datasets such as...1 version - Latest release: 9 months ago - 1 dependent repositories - 5 stars on GitHub - 2 maintainers
wc-lang 0.0.1
Language for describing whole-cell models1 version - Latest release: 9 months ago - 1 dependent repositories - 8 stars on GitHub - 2 maintainers
deepcell-cpu 0.12.9
Deep learning for single cell image segmentation30 versions - Latest release: 9 months ago - 1 dependent repositories - 132 downloads last month - 388 stars on GitHub - 1 maintainer
cytoskeleton-analyser 1.6.5
Examines simulated cell microtubules1 version - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
cello-classify 2.1.1
CellO7 versions - Latest release: 11 months ago - 2 dependent repositories - 71 downloads last month - 60 stars on GitHub - 1 maintainer
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 2 maintainers
cellshape 0.0.31
3D shape analysis using deep learning41 versions - Latest release: about 1 year ago - 326 downloads last month - 19 stars on GitHub - 2 maintainers
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.4 versions - Latest release: over 2 years ago - 3 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
cytounet 0.2.2
Deep Learning based Cell Segmentation4 versions - Latest release: over 2 years ago - 1 dependent repositories - 25 downloads last month - 6 stars on GitHub - 1 maintainer
cellseg 0.0.0
Multiclass Cell Segmentation1 version - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 6 stars on GitHub - 1 maintainer
actk 0.2.2
Automated Cell Toolkit6 versions - Latest release: over 3 years ago - 75 downloads last month - 23 stars on GitHub - 1 maintainer
deepliif 1.1.10
DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quant...9 versions - Latest release: 28 days ago - 1 dependent repositories - 88 downloads last month - 132 stars on GitHub - 2 maintainers
Related Keywords
segmentation
7
biology
7
deep-learning
7
computational-biology
5
systems-biology
5
cell-segmentation
5
image-segmentation
4
tensorflow
4
image-processing
4
computational biology
4
whole-cell
3
systems
3
instance-segmentation
3
whole-cell-modeling
3
cell
3
unet-tensorflow
2
python3
2
pypi
2
keras-tensorflow
2
image-segmentation-tensorflow
2
dataset
2
convolutional-neural-networks
2
annotations
2
image-analysis
2
images
2
systems biology
2
numerical simulation
2
SBML
2
sed-ml
2
omex
2
biosimulators
2
combine
2
pytorch
2
microscopy
2
machine-learning
2
bioinformatics
2
RBApy
1
OMEX
1
COMBINE
1
SED-ML
1
BioSimulators
1
RBA
1
immunohistochemical-images
1
resource balance analysis
1
reaction network
1
geometric-deep-learning
1
cancer-biology
1
pathology
1
immunohistochemistry
1
sbml
1
multiplex
1
multitask-learning
1
flux-balance-analysis
1
torch
1
actk
1
workflow
1
pathology-image
1
pipeline
1
DeepLIIF
1
IHC
1
Segmentation
1
Classification
1
pathology-gan
1
ai-ready
1
cloud-native-applications
1
datasets
1
keras
1
resource-balance-analysis
1
rba
1
numerical-simulation
1
mathematical-modeling
1
biochemistry
1
fba
1
dynamical-modeling
1
computational
1
rule-based-modeling
1
kinetic-modeling
1
optimal-transport
1
inverse-problems
1
python
1
image-projections
1
epithelial-tissue
1
cell-shape
1
topology
1
tissue
1
shape
1
mechanics
1
streamlit
1
geometry
1
cell-geometry
1
cell-analysis
1
vesicles
1
napari-plugin
1
napari
1
microscopy model compression
1
quantization
1
deep learning
1
biosimulations
1
bigg
1
BiGG
1