Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "cell-biology" keyword

Top 1.8% on pypi.org
cellpose 3.0.8
anatomical segmentation algorithm
78 versions - Latest release: 14 days ago - 43 dependent packages - 58 dependent repositories - 29.3 thousand downloads last month - 1,042 stars on GitHub - 2 maintainers
efficientbioai 0.0.6
efficientbioai is a python package for efficient deep learning in bioimaging
2 versions - Latest release: about 1 year ago - 18 downloads last month - 1,155 stars on GitHub - 1 maintainer
cellpose-vollseg 0.0.3
modification of cellpose algorithm
3 versions - Latest release: over 1 year ago - 1 dependent package - 75 downloads last month - 1,201 stars on GitHub - 1 maintainer
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.
1 version - Latest release: almost 2 years ago - 25 downloads last month - 4 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
deepcell 0.12.9
Deep learning for single cell image segmentation
34 versions - Latest release: 9 months ago - 3 dependent packages - 7 dependent repositories - 1.72 thousand downloads last month - 369 stars on GitHub - 1 maintainer
cellgeometry 0.1.2
Statistical Cell Shape Analysis
3 versions - Latest release: about 1 year ago - 39 downloads last month - 1 stars on GitHub - 1 maintainer
epitools 0.0.12
Quantifying 2D cell shape and epithelial tissue dynamics
12 versions - Latest release: 9 months ago - 162 downloads last month - 6 stars on GitHub - 1 maintainer
deepcelltl 0.12.5
Deep learning for single cell image segmentation
3 versions - Latest release: over 1 year ago - 46 downloads last month - 369 stars on GitHub - 1 maintainer
optiflow 1.1.1
Reconstruction of flows from kymographs with optimal transport
3 versions - Latest release: over 1 year ago - 36 downloads last month - 4 stars on GitHub - 1 maintainer
wc-rules 0.0.1
Language for describing whole-cell models
1 version - Latest release: 9 months ago - 1 dependent repositories - 9 stars on GitHub - 2 maintainers
wc-model-gen 0.0.1
Framework for systematically and scalably designing whole-cell models from large datasets such as...
1 version - Latest release: 9 months ago - 1 dependent repositories - 5 stars on GitHub - 2 maintainers
wc-lang 0.0.1
Language for describing whole-cell models
1 version - Latest release: 9 months ago - 1 dependent repositories - 8 stars on GitHub - 2 maintainers
deepcell-cpu 0.12.9
Deep learning for single cell image segmentation
30 versions - Latest release: 9 months ago - 1 dependent repositories - 132 downloads last month - 388 stars on GitHub - 1 maintainer
cytoskeleton-analyser 1.6.5
Examines simulated cell microtubules
1 version - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
cello-classify 2.1.1
CellO
7 versions - Latest release: 11 months ago - 2 dependent repositories - 71 downloads last month - 60 stars on GitHub - 1 maintainer
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.
5 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 2 maintainers
cellshape 0.0.31
3D shape analysis using deep learning
41 versions - Latest release: about 1 year ago - 326 downloads last month - 19 stars on GitHub - 2 maintainers
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.
4 versions - Latest release: over 2 years ago - 3 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
cytounet 0.2.2
Deep Learning based Cell Segmentation
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 25 downloads last month - 6 stars on GitHub - 1 maintainer
cellseg 0.0.0
Multiclass Cell Segmentation
1 version - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 6 stars on GitHub - 1 maintainer
actk 0.2.2
Automated Cell Toolkit
6 versions - Latest release: over 3 years ago - 75 downloads last month - 23 stars on GitHub - 1 maintainer
deepliif 1.1.10
DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quant...
9 versions - Latest release: 28 days ago - 1 dependent repositories - 88 downloads last month - 132 stars on GitHub - 2 maintainers
Related Keywords
segmentation 7 biology 7 deep-learning 7 computational-biology 5 systems-biology 5 cell-segmentation 5 image-segmentation 4 tensorflow 4 image-processing 4 computational biology 4 whole-cell 3 systems 3 instance-segmentation 3 whole-cell-modeling 3 cell 3 unet-tensorflow 2 python3 2 pypi 2 keras-tensorflow 2 image-segmentation-tensorflow 2 dataset 2 convolutional-neural-networks 2 annotations 2 image-analysis 2 images 2 systems biology 2 numerical simulation 2 SBML 2 sed-ml 2 omex 2 biosimulators 2 combine 2 pytorch 2 microscopy 2 machine-learning 2 bioinformatics 2 RBApy 1 OMEX 1 COMBINE 1 SED-ML 1 BioSimulators 1 RBA 1 immunohistochemical-images 1 resource balance analysis 1 reaction network 1 geometric-deep-learning 1 cancer-biology 1 pathology 1 immunohistochemistry 1 sbml 1 multiplex 1 multitask-learning 1 flux-balance-analysis 1 torch 1 actk 1 workflow 1 pathology-image 1 pipeline 1 DeepLIIF 1 IHC 1 Segmentation 1 Classification 1 pathology-gan 1 ai-ready 1 cloud-native-applications 1 datasets 1 keras 1 resource-balance-analysis 1 rba 1 numerical-simulation 1 mathematical-modeling 1 biochemistry 1 fba 1 dynamical-modeling 1 computational 1 rule-based-modeling 1 kinetic-modeling 1 optimal-transport 1 inverse-problems 1 python 1 image-projections 1 epithelial-tissue 1 cell-shape 1 topology 1 tissue 1 shape 1 mechanics 1 streamlit 1 geometry 1 cell-geometry 1 cell-analysis 1 vesicles 1 napari-plugin 1 napari 1 microscopy model compression 1 quantization 1 deep learning 1 biosimulations 1 bigg 1 BiGG 1