Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "computational biology" keyword
Top 6.0% on pypi.org
31 versions - Latest release: about 1 year ago - 24 dependent packages - 7 dependent repositories - 6.32 thousand downloads last month - 33 stars on GitHub - 1 maintainer
aicspylibczi 3.1.2
A python module and a python extension for Zeiss (CZI/ZISRAW) microscopy files.31 versions - Latest release: about 1 year ago - 24 dependent packages - 7 dependent repositories - 6.32 thousand downloads last month - 33 stars on GitHub - 1 maintainer
biosimulators-tellurium 0.1.42
BioSimulators-compliant command-line interface to the tellurium simulation program <http://tellur...39 versions - Latest release: 9 months ago - 3 dependent repositories - 212 downloads last month - 1 stars on GitHub - 2 maintainers
hillfit 0.1.7
Model for fitting data with the Hill equation, and exporting the contents18 versions - Latest release: over 1 year ago - 1 dependent repositories - 311 downloads last month - 10 stars on GitHub - 2 maintainers
sketchkh 0.1.1
Distribution-based sketching of single-cell samples2 versions - Latest release: 3 months ago - 62 downloads last month - 3 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
148 versions - Latest release: 16 days ago - 5 dependent packages - 4 dependent repositories - 1.19 thousand downloads last month - 2 stars on GitHub - 3 maintainers
quasinet 0.1.68
Utitilies for constructing and manipulating models for non-local structural dependencies in genom...148 versions - Latest release: 16 days ago - 5 dependent packages - 4 dependent repositories - 1.19 thousand downloads last month - 2 stars on GitHub - 3 maintainers
Top 3.0% on pypi.org
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 37.5 thousand downloads last month - 231 stars on GitHub - 2 maintainers
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 37.5 thousand downloads last month - 231 stars on GitHub - 2 maintainers
cando-py 2.3.2
CANDO is a unique computational drug discovery, design, and repurposing platform.3 versions - Latest release: over 1 year ago - 44 downloads last month - 33 stars on GitHub - 1 maintainer
ahab-lib 1.0.1
Python CLI library for interacting with ahab cloud API and Kubernetes systems.1 version - Latest release: 18 days ago - 148 downloads last month - 0 stars on GitHub - 1 maintainer
protkit 0.3.0
A unified toolkit for structural protein engineering.8 versions - Latest release: 9 days ago - 189 downloads last month - 28 stars on GitHub - 1 maintainer
bioinfolearn 0.1
Bioinformatics Learn1 version - Latest release: 7 months ago - 15 downloads last month - 1 maintainer
arcu 0.1.1
Find representative subpopulations in single cell imaging data.2 versions - Latest release: 10 months ago - 29 downloads last month - 0 stars on GitHub - 1 maintainer
deepab-pytorch 0.0.1
Unofficial implementation of DeepAb in PyTorch.1 version - Latest release: 11 months ago - 42 downloads last month - 1 stars on GitHub - 1 maintainer
delve-fs 0.1.4
Feature selection for preserving biological trajectories from single-cell data5 versions - Latest release: 3 months ago - 58 downloads last month - 10 stars on GitHub - 1 maintainer
pifold-pytorch 0.0.1
Unofficial implementation of PiFold in PyTorch.1 version - Latest release: 12 months ago - 13 downloads last month - 4 stars on GitHub - 1 maintainer
foldingdiff-pytorch 0.0.3
Unofficial implementation of foldingdiff in PyTorch.3 versions - Latest release: about 1 year ago - 30 downloads last month - 7 stars on GitHub - 1 maintainer
ginobifold 0.1.3
Simplified Af2 inference code4 versions - Latest release: over 1 year ago - 14 downloads last month - 1 maintainer
wc-sandbox 0.0.1
Jupyter playground for whole-cell modeling1 version - Latest release: over 5 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 2 maintainers
uta 0.1.8
Universal Transcript Archive8 versions - Latest release: over 9 years ago - 1 dependent repositories - 59 downloads last month - 2 maintainers
rdmcl 1.1.0
RDMCL recursively clusters groups of homologous sequences into orthogroups.5 versions - Latest release: over 6 years ago - 1 dependent repositories - 24 downloads last month - 10 stars on GitHub - 1 maintainer
qbiome 0.0.67
Analyzing microbiome abundance data to infer deep structures58 versions - Latest release: about 1 month ago - 1 dependent repositories - 545 downloads last month - 0 stars on GitHub - 2 maintainers
medusa-cobra 0.2.1
Ensemble modeling using constraint-based reconstruction and analysis (COBRA)4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 53 downloads last month - 19 stars on GitHub - 1 maintainer
kipoi-veff 0.3.1
kipoi_veff: variant effect prediction plugin for Kipoi9 versions - Latest release: over 4 years ago - 1 dependent repositories - 161 downloads last month - 6 stars on GitHub - 4 maintainers
Top 5.5% on pypi.org
21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
kipoiseq 0.7.1
kipoiseq: sequence-based data-loaders for Kipoi21 versions - Latest release: over 2 years ago - 3 dependent packages - 62 dependent repositories - 1.9 thousand downloads last month - 76 stars on GitHub - 5 maintainers
kipoi-utils 0.7.7
kipoi-utils: utils used in various packages related to kipoi27 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 1.99 thousand downloads last month - 0 stars on GitHub - 3 maintainers
imcpipeline 0.0.5
A pipeline and utils for IMC data analysis.3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 37 downloads last month - 2 stars on GitHub - 1 maintainer
easy3dmol 0.1.1
easier py3Dmol2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
cytoskeleton-analyser 1.6.5
Examines simulated cell microtubules1 version - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
25 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 563 downloads last month - 32 stars on GitHub - 2 maintainers
concise 0.6.9
CONCISE (COnvolutional Neural for CIS-regulatory Elements)25 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 563 downloads last month - 32 stars on GitHub - 2 maintainers
bpnet 0.0.23
BPNet: toolkit to learn motif synthax from high-resolution functional genomics data using convolu...23 versions - Latest release: almost 4 years ago - 1 dependent repositories - 499 downloads last month - 133 stars on GitHub - 1 maintainer
biosimulators-xpp 0.0.13
BioSimulators-compliant command-line interface to the XPP simulation program.13 versions - Latest release: about 2 years ago - 3 dependent repositories - 131 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-opencor 0.0.13
BioSimulators-compliant command-line interface to the OpenCOR simulation program.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 112 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-pysces 0.1.25
BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.so...29 versions - Latest release: over 2 years ago - 2 dependent repositories - 305 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-masspy 0.0.9
BioSimulators-compliant command-line interface to the MASSpy simulation program.9 versions - Latest release: about 2 years ago - 2 dependent repositories - 106 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-boolnet 0.1.18
BioSimulators-compliant command-line interface to the BoolNet simulation program.19 versions - Latest release: over 2 years ago - 2 dependent repositories - 175 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-libsbmlsim 0.0.6
BioSimulators-compliant command-line interface to LibSBMLsim <http://fun.bio.keio.ac.jp/software/...6 versions - Latest release: over 2 years ago - 3 dependent repositories - 41 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulations-bigg 0.0.5
Command-line program for publishing the BiGG model repository to BioSimulations.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 2 maintainers
biosimulators-amici 0.1.24
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.co...29 versions - Latest release: 11 months ago - 2 dependent repositories - 168 downloads last month - 2 stars on GitHub - 2 maintainers
biosimulations-modeldb 0.0.4
Command-line program for publishing the ModelDB model repository to BioSimulations.3 versions - Latest release: about 2 years ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
bioflow 0.2.3
Information Flow Analysis in biological networks2 versions - Latest release: over 5 years ago - 1 dependent repositories - 32 downloads last month - 8 stars on GitHub - 1 maintainer
emergenet 0.2.8
Superfast Risk Estimation of Emerging Pathogens48 versions - Latest release: about 2 months ago - 333 downloads last month - 1 stars on GitHub - 2 maintainers
rbapy 2.0.1
Package for automated generation of bacterial Resource Balance Analysis (RBA) models and simulati...2 versions - Latest release: 12 months ago - 1 dependent package - 4 dependent repositories - 70 downloads last month - 11 stars on GitHub - 1 maintainer
rbatools 1.0.3
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) m...5 versions - Latest release: 12 months ago - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
kipoi 0.8.6
Kipoi: model zoo for genomics73 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 2.01 thousand downloads last month - 229 stars on GitHub - 4 maintainers
kipoi-conda 0.3.1
kipoi-conda: conda/pip related functionality used by Kipoi12 versions - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 1.92 thousand downloads last month - 0 stars on GitHub - 3 maintainers
protstruc 0.0.7
Utility library for handling protein structures in Python.7 versions - Latest release: 9 months ago - 66 downloads last month - 2 stars on GitHub - 1 maintainer
biosimulators-cbmpy 0.1.15
BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sour...16 versions - Latest release: about 2 years ago - 3 dependent repositories - 175 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-rbapy 0.0.4
BioSimulators-compliant command-line interface to the RBApy simulation program.4 versions - Latest release: over 2 years ago - 3 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
biosimulators-ginsim 0.0.9
BioSimulators-compliant command-line interface to the GINsim simulation program.9 versions - Latest release: over 2 years ago - 2 dependent repositories - 74 downloads last month - 0 stars on GitHub - 3 maintainers
kipoi-interpret 0.1.2
Kipoi interpret: interepretation plugin for Kipoi3 versions - Latest release: about 5 years ago - 1 dependent repositories - 294 downloads last month - 3 stars on GitHub - 4 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
actk 0.2.2
Automated Cell Toolkit6 versions - Latest release: over 3 years ago - 75 downloads last month - 23 stars on GitHub - 1 maintainer
sadie-antibody 1.0.6
"The Complete Antibody Library"80 versions - Latest release: 7 months ago - 1 dependent repositories - 414 downloads last month - 17 stars on GitHub - 1 maintainer
alphafold2mmopt 0.1.1
optimize pdb structures using fine-tune training strategy in alphafold22 versions - Latest release: almost 3 years ago - 1 dependent repositories - 18 downloads last month - 1 maintainer
Related Keywords
bioinformatics
22
systems biology
19
computational-biology
14
sed-ml
13
systems-biology
12
combine
12
omex
12
biosimulators
12
genomics
11
SBML
11
SED-ML
11
COMBINE
11
BioSimulators
11
protein
10
OMEX
10
numerical simulation
10
deep learning
8
sbml
8
biology
7
simulation
7
model zoo
6
python
5
numerical-simulation
5
mathematical-model
5
machine learning
5
cell-biology
4
artificial intelligence
4
biochemistry
4
metabolism
4
antibody
4
mathematical modeling
4
mathematical model
4
kinetic model
4
protein-structure
3
cell biology
3
decision trees
3
single-cell bioinformatics
3
XPP
2
imaging
2
kisao
2
molecular biology
2
cell
2
workflow
2
biosimulations
2
logical model
2
fba
2
xpp
2
modeling
2
reaction network
2
data science
2
hgvs
2
genome variation
2
flux-balance-analysis
2
machine-learning
2
protein structure prediction
2
mathematical-modeling
2
Systems Biology Markup Language
1
BiGG
1
bigg
1
neuroscience
1
ModelDB
1
resource balance analysis
1
FBA
1
flux balance analysis
1
biochemical network
1
mathematical-modelling
1
libsbmlsim
1
logical-model
1
BoolNet
1
reaction-network
1
MASSpy
1
kinetic-model
1
biochemical-network
1
cellml
1
OpenCOR
1
CellML
1
RBA
1
RBApy
1
rba
1
resource-balance-analysis
1
GINsim
1
ginsim
1
logical-modeling
1
qualitative-modeling
1
sbml-qual
1
computational genetics
1
genetics
1
genome
1
phylogenetics
1
alignment
1
command-line
1
dna
1
actk
1
microscopy
1
image-processing
1
pipeline
1
immunoinformatics
1
force fields
1
molecular mechanics
1
electrophysiology
1