Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bacterial-genomes" keyword
cogor 0.5
Package for improving the functional annotation of bacterial genomes, classification of protein-c...5 versions - Latest release: about 2 years ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
magphi 2.0.2
A bioinformatics tool allowing for examnination and extraction of genomic features using seed seq...7 versions - Latest release: over 1 year ago - 1 dependent repositories - 34 downloads last month - 12 stars on GitHub - 1 maintainer
crispio 0.0.2
Designing CRISPR-Cas guide RNAs in bacteria.4 versions - Latest release: 3 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
stringmlst 0.6.3
Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly...15 versions - Latest release: almost 4 years ago - 1 dependent repositories - 93 downloads last month - 41 stars on GitHub - 1 maintainer
strainscan 1.0.14
One efficient and accurate strain-level microbiome composition analysis tool based on reference g...14 versions - Latest release: 8 months ago - 1 dependent repositories - 79 downloads last month - 30 stars on GitHub - 1 maintainer
bakta 1.9.3
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids39 versions - Latest release: 3 months ago - 1 dependent repositories - 511 downloads last month - 383 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
5
bacteria
3
Bacterial genome
1
MLST
1
applied-bioinformatics-lab
1
bacterial-database
1
fastq-files
1
kmer
1
mlst
1
python
1
k-mers
1
metagenomics
1
reference-based
1
strains
1
annotation
1
plasmids
1
genome-annotation
1
mag
1
metagenome-assembled-genomes
1
microbial-genomics
1
Functional annotation
1
COG
1
functional-annotation
1
Genomic
1
extraction
1
prokaryotes
1
annotations
1
insertion-sites
1
mobile-genetic-elements
1
prokaryotic-genomes
1
biology
1
CRISPR
1
science
1
crispr
1
crispri
1
fitness
1
guide-rna-library
1