pypi.org "bacterial-genomes" keyword
View the packages on the pypi.org package registry that are tagged with the "bacterial-genomes" keyword.
crispio 0.0.3
Designing CRISPR-Cas guide RNAs in bacteria.5 versions - Latest release: about 1 month ago - 279 downloads last month - 0 stars on GitHub - 1 maintainer
bakta 1.11.0
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids46 versions - Latest release: about 2 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 441 stars on GitHub - 1 maintainer
defense-predictor 0.1.2
Python module for running Defense Predictor, a machine learning model to predict antiphage defens...2 versions - Latest release: 2 months ago - 168 downloads last month - 873 stars on GitHub - 1 maintainer
magphi 2.0.2
A bioinformatics tool allowing for examnination and extraction of genomic features using seed seq...7 versions - Latest release: over 2 years ago - 1 dependent repositories - 250 downloads last month - 13 stars on GitHub - 1 maintainer
stringmlst 0.6.3
Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly...15 versions - Latest release: over 4 years ago - 1 dependent repositories - 273 downloads last month - 43 stars on GitHub - 1 maintainer
taranys 3.0.1
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak ...2 versions - Latest release: 4 months ago - 50 downloads last month - 9 stars on GitHub - 2 maintainers
cogor 0.5
Package for improving the functional annotation of bacterial genomes, classification of protein-c...5 versions - Latest release: almost 3 years ago - 142 downloads last month - 0 stars on GitHub - 1 maintainer
strainscan 1.0.14
One efficient and accurate strain-level microbiome composition analysis tool based on reference g...14 versions - Latest release: over 1 year ago - 1 dependent repositories - 198 downloads last month - 40 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
6
bacteria
3
mlst
2
genome-annotation
2
biology
1
bacterial-database
1
fastq-files
1
kmer
1
python
1
assembly
1
cgMLST
1
wgMLST
1
MLST schema
1
cgmlst
1
outbreak-data-analysis
1
outbreak-detection
1
sequencing
1
wgmlst
1
Bacterial genome
1
Functional annotation
1
COG
1
functional-annotation
1
k-mers
1
metagenomics
1
reference-based
1
strains
1
CRISPR
1
science
1
crispr
1
crispri
1
fitness
1
guide-rna-library
1
annotation
1
plasmids
1
mag
1
metagenome-assembled-genomes
1
microbial-genomics
1
functional-assignment
1
gene-finding
1
Genomic
1
extraction
1
prokaryotes
1
annotations
1
insertion-sites
1
mobile-genetic-elements
1
prokaryotic-genomes
1
MLST
1
applied-bioinformatics-lab
1