Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microbial-genomics" keyword
genegrouper 1.0.3
Find and cluster genomic regions containing a seed gene7 versions - Latest release: over 2 years ago - 1 dependent repositories - 72 downloads last month - 17 stars on GitHub - 1 maintainer
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics23 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 535 downloads last month - 227 stars on GitHub - 1 maintainer
pybarrnap 0.5.0
Python implementation of barrnap (Bacterial ribosomal RNA predictor)7 versions - Latest release: 2 months ago - 55 downloads last month - 7 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
19 versions - Latest release: about 2 months ago - 7 dependent packages - 1 dependent repositories - 2.34 thousand downloads last month - 619 stars on GitHub - 1 maintainer
pycirclize 1.4.0
Circular visualization in Python19 versions - Latest release: about 2 months ago - 7 dependent packages - 1 dependent repositories - 2.34 thousand downloads last month - 619 stars on GitHub - 1 maintainer
motulizer 0.3.2
making OTUs from genomes, and stats on them. and even core-genomes16 versions - Latest release: over 2 years ago - 1 dependent repositories - 197 downloads last month - 11 stars on GitHub - 1 maintainer
biodive 0.1.2
Discovery of k-mer sequences associated with high rates of sequence diversification.4 versions - Latest release: almost 2 years ago - 8 downloads last month - 5 stars on GitHub - 1 maintainer
mgcplotter 1.0.1
Microbial Genome Circular plotting tool using Circos3 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 31 stars on GitHub - 1 maintainer
treesapp 0.11.4
TreeSAPP is a functional and taxonomic annotation tool for genomes and metagenomes.23 versions - Latest release: almost 2 years ago - 1 dependent repositories - 730 downloads last month - 24 stars on GitHub - 1 maintainer
superpang 1.3.0
Non-redundant pangenome assemblies from multiple genomes or bins18 versions - Latest release: 2 months ago - 1 dependent repositories - 25 downloads last month - 11 stars on GitHub - 1 maintainer
mdu-pytools 0.2.0
Small tools/scripts written in Python for MDU3 versions - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 0 stars on GitHub - 1 maintainer
lissero 0.4.9
In silico serotyping of Listeria monocytogenes9 versions - Latest release: about 3 years ago - 1 dependent repositories - 57 downloads last month - 7 stars on GitHub - 1 maintainer
gbkviz 1.2.0
Simple web application to visualize and compare genomes in Genbank files12 versions - Latest release: about 2 years ago - 1 dependent repositories - 125 downloads last month - 19 stars on GitHub - 1 maintainer
cogclassifier 1.0.5
A tool for classifying prokaryote protein sequences into COG functional category7 versions - Latest release: over 1 year ago - 1 dependent repositories - 101 downloads last month - 37 stars on GitHub - 1 maintainer
bakta 1.9.3
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids39 versions - Latest release: 2 months ago - 1 dependent repositories - 511 downloads last month - 383 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: over 9 years ago - 3 dependent repositories - 41 downloads last month - 12 stars on GitHub - 1 maintainer
aniclustermap 1.3.0
A tool for drawing ANI clustermap between all-vs-all microbial genomes5 versions - Latest release: 6 months ago - 1 dependent repositories - 69 downloads last month - 41 stars on GitHub - 1 maintainer
albatradis 1.0.1
Comparitive transposon mutagenesis experiment analysis2 versions - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 7 stars on GitHub - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: about 8 years ago - 2 dependent repositories - 18 downloads last month - 12 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
18
genomics
11
python
10
visualization
9
comparative-genomics
6
phylogenetics
4
genomics-visualization
4
microbiology
4
microbiome-analysis
3
metagenomics
2
QIIME
2
microbial ecology
2
16S
2
slurm
2
qiime
2
pbs
2
microbiome
2
hpc
2
cross-platform
2
computational-biology
2
16s
2
circos
2
genome-annotation
2
genbank
2
matplotlib
2
clustering
2
metagenome-assembled-genomes
1
mag
1
bacterial-genomes
1
plasmids
1
bacteria
1
annotation
1
protein
1
genome-analysis
1
cog
1
comparative-analysis
1
clustermap
1
phylogenomics
1
taxonomy
1
bioinformatics-pipeline
1
global-health
1
infectious-diseases
1
next-generation-sequencing
1
pathogen
1
research
1
sequencing
1
tradis
1
transposon-mutagenesis
1
phylotoast
1
mobile-genetic-elements
1
crispr-cas9
1
diversity-generating mechanisms
1
crispr
1
mobile genetic elements
1
horizontal gene transfer
1
radar-chart
1
phylogenetic-trees
1
dataviz
1
data-visualization
1
chord-diagram
1
rna
1
synteny
1
gff3
1
gff
1
bioinformatics-tool
1
functional-analysis
1
functional-annotation
1
COG
1
webapp
1
biopython
1
streamlit
1
gbkviz
1
serotyping
1
public-health
1
listeria-monocytogenes
1
Serotyping
1
Bioinformatics
1
Listeria
1
scripts
1
pangenome
1
assembly
1
molecular-evolution
1