pypi.org "microbial-genomics" keyword
View the packages on the pypi.org package registry that are tagged with the "microbial-genomics" keyword.
bakta 1.11.4
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids50 versions - Latest release: 9 days ago - 1 dependent repositories - 681 downloads last month - 545 stars on GitHub - 1 maintainer
cogclassifier 2.0.0
A tool for classifying prokaryote protein sequences into COG functional category8 versions - Latest release: 5 months ago - 1 dependent repositories - 101 downloads last month - 71 stars on GitHub - 1 maintainer
pygenomeviz 1.6.1
A genome visualization python package for comparative genomics34 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 1.52 thousand downloads last month - 357 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
28 versions - Latest release: 15 days ago - 7 dependent packages - 1 dependent repositories - 11.8 thousand downloads last month - 684 stars on GitHub - 1 maintainer
pycirclize 1.10.0
Circular visualization in Python28 versions - Latest release: 15 days ago - 7 dependent packages - 1 dependent repositories - 11.8 thousand downloads last month - 684 stars on GitHub - 1 maintainer
aniclustermap 2.0.1
A tool for drawing ANI clustermap between all-vs-all microbial genomes8 versions - Latest release: 4 months ago - 1 dependent repositories - 108 downloads last month - 41 stars on GitHub - 1 maintainer
mdu-pytools 0.2.0
Small tools/scripts written in Python for MDU3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
biodive 0.1.2
Discovery of k-mer sequences associated with high rates of sequence diversification.4 versions - Latest release: about 3 years ago - 21 downloads last month - 5 stars on GitHub - 1 maintainer
motulizer 0.3.2
making OTUs from genomes, and stats on them. and even core-genomes16 versions - Latest release: almost 4 years ago - 1 dependent repositories - 105 downloads last month - 15 stars on GitHub - 1 maintainer
ppanggolin 2.2.4
Pangenome analysis suite3 versions - Latest release: 2 months ago - 232 downloads last month - 276 stars on GitHub - 4 maintainers
mgcplotter 1.0.1
Microbial Genome Circular plotting tool using Circos3 versions - Latest release: over 3 years ago - 1 dependent repositories - 20 downloads last month - 38 stars on GitHub - 1 maintainer
albatradis 1.0.1
Comparitive transposon mutagenesis experiment analysis2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 48 downloads last month - 9 stars on GitHub - 1 maintainer
gbkviz 1.2.0
Simple web application to visualize and compare genomes in Genbank files12 versions - Latest release: over 3 years ago - 1 dependent repositories - 48 downloads last month - 21 stars on GitHub - 1 maintainer
pybarrnap 0.5.1
Python implementation of barrnap (Bacterial ribosomal RNA predictor)8 versions - Latest release: 7 months ago - 29 downloads last month - 22 stars on GitHub - 1 maintainer
treesapp 0.11.4
TreeSAPP is a functional and taxonomic annotation tool for genomes and metagenomes.23 versions - Latest release: over 3 years ago - 1 dependent repositories - 427 downloads last month - 26 stars on GitHub - 1 maintainer
superpang 1.3.1
Non-redundant pangenome assemblies from multiple genomes or bins20 versions - Latest release: about 1 year ago - 1 dependent repositories - 21 downloads last month - 13 stars on GitHub - 1 maintainer
genegrouper 1.0.3
Find and cluster genomic regions containing a seed gene7 versions - Latest release: over 3 years ago - 1 dependent repositories - 19 downloads last month - 20 stars on GitHub - 1 maintainer
lissero 0.4.9
In silico serotyping of Listeria monocytogenes9 versions - Latest release: over 4 years ago - 1 dependent repositories - 56 downloads last month - 7 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: almost 11 years ago - 3 dependent repositories - 26 downloads last month - 14 stars on GitHub - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: over 9 years ago - 2 dependent repositories - 17 downloads last month - 14 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
19
genomics
11
python
10
visualization
9
comparative-genomics
7
microbiology
5
phylogenetics
4
genomics-visualization
4
microbiome-analysis
3
metagenomics
2
clustering
2
circos
2
QIIME
2
Bioinformatics
2
genbank
2
matplotlib
2
pangenome
2
genome-annotation
2
qiime
2
pbs
2
slurm
2
bacteria
2
microbiome
2
hpc
2
cross-platform
2
computational-biology
2
16s
2
16S
2
microbial ecology
2
bioinformatics-pipeline
1
phylotoast
1
dataviz
1
global-health
1
infectious-diseases
1
next-generation-sequencing
1
pathogen
1
research
1
sequencing
1
tradis
1
transposon-mutagenesis
1
gbkviz
1
streamlit
1
biopython
1
webapp
1
rna
1
assembly
1
bioinformatics-tool
1
Listeria
1
Serotyping
1
listeria-monocytogenes
1
public-health
1
serotyping
1
data-visualization
1
chord-diagram
1
synteny
1
gff3
1
gff
1
protein
1
genome-analysis
1
cog
1
functional-annotation
1
functional-analysis
1
COG
1
metagenome-assembled-genomes
1
mag
1
bacterial-genomes
1
plasmids
1
annotation
1
molecular-evolution
1
comparative-analysis
1
Prokaryote
1
Comparative genomics
1
Pangenomics
1
mobile-genetic-elements
1
crispr-cas9
1
diversity-generating mechanisms
1
crispr
1
mobile genetic elements
1
horizontal gene transfer
1
scripts
1
taxonomy
1
phylogenomics
1
clustermap
1
radar-chart
1
phylogenetic-trees
1