Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microscopy" keyword
bandit-optimization 0.0.1
Bandit optimization algorithms for microscopy1 version - Latest release: 2 months ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
imagej-rolling-ball 2023.8.6
Python wrapper for ImageJ's rolling ball background subtraction using pyimagej7 versions - Latest release: 9 months ago - 40 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-nd2 1.0.0
A BioIO reader plugin for reading ND2 images.2 versions - Latest release: 6 months ago - 360 downloads last month - 0 stars on GitHub - 1 maintainer
acquifer 2.0.0
Utilitary functions when working with image datasets acquired with an ACQUIFER Imaging Machine mi...2 versions - Latest release: 3 months ago - 1 dependent package - 58 downloads last month - 0 stars on GitHub - 1 maintainer
pyhmsa-matlab 0.1.0
UNKNOWN1 version - Latest release: over 8 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
pyhmsa-tiff 0.1.0
UNKNOWN1 version - Latest release: over 8 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-imageio 1.0.0
A BioIO reader plugin for reading simple image formats using imageio.2 versions - Latest release: 6 months ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-base 1.0.0
Typing, base classes, and more for BioIO projects.6 versions - Latest release: 6 months ago - 13 dependent packages - 1 dependent repositories - 6.31 thousand downloads last month - 0 stars on GitHub - 2 maintainers
bioio-dv 1.0.0
A BioIO reader plugin for reading Digital Video (DV) files.2 versions - Latest release: 6 months ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
jicbioimage.segment 0.4.0
Python package designed to make it easy to segment bio images.4 versions - Latest release: about 8 years ago - 3 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
seq-io 0.10
Import .seq files into hyperspy4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
qpimage 0.9.2
library for manipulating quantitative phase images46 versions - Latest release: 7 months ago - 1 dependent package - 6 dependent repositories - 503 downloads last month - 0 stars on GitHub - 2 maintainers
bioio-ome-tiled-tiff 1.0.0
A BioIO reader plugin for reading tiled ome.tiff images.2 versions - Latest release: 6 months ago - 38 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-types 0.0.2
Typing, base classes, and more for BioIO projects.2 versions - Latest release: almost 2 years ago - 34 downloads last month - 0 stars on GitHub - 2 maintainers
microscopemetrics 0.2.2
A package providing analysis routines to measure the performance of micrsocopes used in biomedica...4 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-sldy 1.0.1
A BioIO reader plugin for reading 3i slidebook (SLDY) images.4 versions - Latest release: 2 months ago - 299 downloads last month - 0 stars on GitHub - 2 maintainers
blitzcurve 0.0.2
Time-resolved fluorescence anisotropy analysis.1 version - Latest release: about 6 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-tiff-glob 1.0.0
A BioIo reader for reading Tiff Glob images2 versions - Latest release: 6 months ago - 39 downloads last month - 0 stars on GitHub - 1 maintainer
utoolbox 0.6.7
Metapackage for uToolbox, a Python image processing package for LLSM.79 versions - Latest release: almost 4 years ago - 1 dependent repositories - 391 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-bioformats 1.0.0
A BioIO reader for reading bioformats formatted images.2 versions - Latest release: 6 months ago - 1 dependent package - 4.34 thousand downloads last month - 0 stars on GitHub - 1 maintainer
bioio-ome-tiff 1.0.0
A BioIO reader plugin for reading tiff files in the OME format.2 versions - Latest release: 6 months ago - 2 dependent packages - 613 downloads last month - 0 stars on GitHub - 1 maintainer
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-lif 1.0.0
A BioIO reader plugin for reading LIF (Leica Image File) images.2 versions - Latest release: 6 months ago - 587 downloads last month - 0 stars on GitHub - 1 maintainer
jicimagelib 0.3.4
Python package designed to make it easy to work with microscopy images.6 versions - Latest release: over 8 years ago - 2 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
doubleblind 1.1.1 💰
Automatically and reversibly replace file names with random strings to help experimenters quantif...4 versions - Latest release: 4 months ago - 48 downloads last month - 0 stars on GitHub - 1 maintainer
jicbioimage.illustrate 0.6.1
Python package providing a set of tools for creating annotated images and illustrations.10 versions - Latest release: over 7 years ago - 3 dependent repositories - 38 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-czi 1.0.0
A Bioio reader plugin for reading czi images.2 versions - Latest release: 6 months ago - 1 dependent package - 592 downloads last month - 0 stars on GitHub - 1 maintainer
multi-locus-analysis 0.1.0
Utilities for analyzing particle trajectories15 versions - Latest release: over 3 years ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
nd2file 0.0.1.dev2
Access Nikon NIS-Elements ND2 files2 versions - Latest release: about 4 years ago - 2 dependent packages - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
utoolbox-image 0.0.2
Image processing functions for uToolbox.2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-tifffile 1.0.0
A BioIO reader plugin for reading TIFFs using Tifffile2 versions - Latest release: 6 months ago - 2 dependent packages - 586 downloads last month - 0 stars on GitHub - 1 maintainer
naclib 1.1.0
Non-Affine Corrections on microscopy images using S/T Polynomial Decomposition5 versions - Latest release: about 1 year ago - 2 dependent repositories - 22 downloads last month - 0 stars on GitHub - 1 maintainer
ssm-analyze 0.2.6
Analysis GUI for scanning SQUID microscopy13 versions - Latest release: about 3 years ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 1 maintainer
microimage 2.3.1
Python module to open common types of image used in microscopy.1 version - Latest release: over 3 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
pyhmsa-gui 0.1.5
Graphical components to represent HMSA specification5 versions - Latest release: over 8 years ago - 1 dependent repositories - 58 downloads last month - 0 stars on GitHub - 1 maintainer
segmentation 0.2.2
Mixture model segmentation6 versions - Latest release: about 3 years ago - 5 dependent repositories - 373 downloads last month - 1 stars on GitHub - 1 maintainer
pyrastitcher 0.0.1
Provides a Python interface to the Terastitcher program.1 version - Latest release: about 8 years ago - 2 dependent repositories - 10 downloads last month - 1 stars on GitHub - 1 maintainer
scanpatterns 0.2.0
Parametric patterns for laser scanning microscopy4 versions - Latest release: about 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
qpformat 0.14.4
library for opening quantitative phase imaging data47 versions - Latest release: over 1 year ago - 1 dependent repositories - 392 downloads last month - 1 stars on GitHub - 2 maintainers
sxdm 1.0.0
Tools for analyzing Scanning X-ray Diffraction Microscopy data26 versions - Latest release: over 2 years ago - 1 dependent repositories - 363 downloads last month - 1 stars on GitHub - 1 maintainer
anasyspythontools 0.4.1
A suite of Python tools for use with Analysis Studio AFM-IR files.4 versions - Latest release: over 1 year ago - 34 downloads last month - 1 stars on GitHub - 1 maintainer
ddmtools 0.3.0
A Python library for doing differential dynamic microscopy on polydisperse samples7 versions - Latest release: about 2 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
cenfind 0.14.0
Score cells for centrioles in IF data32 versions - Latest release: 3 months ago - 159 downloads last month - 1 stars on GitHub - 1 maintainer
tunacell 0.2.2
Analysis of Timeseries from dividing UNicellular microorganisms6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 36 downloads last month - 1 stars on GitHub - 1 maintainer
jicbioimage.transform 0.6.0
Python package wrapping commonly used image transformations.10 versions - Latest release: over 7 years ago - 4 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
tomosuitepy 0.0.2
TomoSuitePY is a culmination of machine learning networks and data preparation methods for those ...1 version - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
clonedetective 0.0.3
A python package for the scalable analysis of fluorescent imaging data from lineage tracing exper...3 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 1 maintainer
impose 0.4.8
Fit and superimpose shapes from different imaging modalities19 versions - Latest release: 11 days ago - 3 dependent repositories - 193 downloads last month - 1 stars on GitHub - 2 maintainers
frc 0.1.1
Library for computing Fourier Ring Correlation (FRC) curves and using them to determine image res...2 versions - Latest release: about 2 months ago - 1 dependent repositories - 70 downloads last month - 1 stars on GitHub - 1 maintainer
pycellid 0.0.18
Functions to analyze single-cell2 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 1 stars on GitHub - 3 maintainers
jicbioimage.core 0.15.0
Python package designed to make it easy to work with bio images.23 versions - Latest release: over 7 years ago - 7 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
pylo 1.0.0
A python program to record image series with Lorentz-TEM.1 version - Latest release: about 3 years ago - 3 dependent repositories - 42 downloads last month - 1 stars on GitHub - 1 maintainer
fastddm 0.3.10
A Python/C++ library for the analysis of Differential Dynamic Microscopy experiments5 versions - Latest release: about 2 months ago - 344 downloads last month - 2 stars on GitHub - 1 maintainer
drymass 0.12.0
manipulation and analysis of phase microscopy data41 versions - Latest release: about 2 years ago - 1 dependent repositories - 307 downloads last month - 2 stars on GitHub - 2 maintainers
pyhmsa 0.2.0
Python implementation of the MSA / MAS / AMAS Hyper-Dimensional Data File specification10 versions - Latest release: about 5 years ago - 2 dependent repositories - 102 downloads last month - 2 stars on GitHub - 1 maintainer
minerva-lib 0.0.5
Minerva Python library4 versions - Latest release: over 3 years ago - 1 dependent repositories - 43 downloads last month - 2 stars on GitHub - 1 maintainer
napari-bleach-correct 0.0.1
A napari plugin to correct time-lapse images for photobleaching.1 version - Latest release: over 1 year ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
magali 0.0.post13
Modelling and inversion of magnetic microscopy data1 version - Latest release: about 1 year ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
bmlab 0.8.0
Library for Brillouin microscopy data analysis37 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 350 downloads last month - 2 stars on GitHub - 2 maintainers
nfinder 0.3
Automatic inference of neighboring cells based on their Delaunay triangulation.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 1 maintainer
radiantkit 0.0.1
Radial Image Analysis Toolkit1 version - Latest release: over 5 years ago - 1 dependent repositories - 12 downloads last month - 2 stars on GitHub - 1 maintainer
pygpseq 3.4.1
A GPSeq image analysis package6 versions - Latest release: over 2 years ago - 1 dependent repositories - 31 downloads last month - 2 stars on GitHub - 1 maintainer
xanespy 0.3.3
Tools for analyzing X-ray absorbance spectroscopy data11 versions - Latest release: almost 5 years ago - 1 dependent repositories - 124 downloads last month - 3 stars on GitHub - 1 maintainer
feature-based-registration-bioinfotongli 2.0.1 removed
Feature-spot-based image registration for fluorescence microscopy images2 versions - Latest release: about 2 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
jicbioimage 0.10.1
Python package designed to make it easy to work with bio images.4 versions - Latest release: about 8 years ago - 3 dependent repositories - 11 downloads last month - 3 stars on GitHub - 1 maintainer
optical-flow-registration-bioinfotongli 1.0.0 removed
Optical-flow-based image registration for fluorescence microscopy images1 version - Latest release: about 2 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
ffta 0.3.4
Fast Free Transient Analysis11 versions - Latest release: almost 3 years ago - 1 dependent repositories - 90 downloads last month - 3 stars on GitHub - 1 maintainer
utoolbox-core 0.0.22
Core functions for uToolbox.49 versions - Latest release: almost 4 years ago - 2 dependent repositories - 274 downloads last month - 3 stars on GitHub - 1 maintainer
instrumentools 0.1.3
Data processing and plotting scripts for chemistry workflows1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 3 stars on GitHub - 1 maintainer
qpsphere 0.5.9
library for analyzing spherical objects in phase imaging28 versions - Latest release: about 2 years ago - 2 dependent repositories - 310 downloads last month - 4 stars on GitHub - 2 maintainers
fpd-live-imaging 0.0.4
Library for live processing and visualization of STEM data acquired using a fast pixelated detector1 version - Latest release: over 6 years ago - 1 dependent repositories - 20 downloads last month - 4 stars on GitLab.com - 1 maintainer
pie 1.0.1
Colony recognition and growth measurement for microbial imaging2 versions - Latest release: over 1 year ago - 3 dependent repositories - 634 downloads last month - 4 stars on GitHub - 1 maintainer
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: almost 2 years ago - 25 downloads last month - 4 stars on GitHub - 1 maintainer
ndexchange 1.0.10
Python 3 program to download data from NeuroData11 versions - Latest release: about 5 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 2 maintainers
pybasic-illumination-correction 0.1.1
Python Implementation of the BaSiC shading correction algorithm2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 27 downloads last month - 4 stars on GitHub - 1 maintainer
merlin-interface 0.0.5
Library for interfacing with the Merlin Medipix3 readout software over the TCP/IP API3 versions - Latest release: over 4 years ago - 1 dependent repositories - 28 downloads last month - 4 stars on GitLab.com - 1 maintainer
simtk 0.1.0
sim: structured illumination microscopy1 version - Latest release: over 3 years ago - 2 dependent repositories - 324 downloads last month - 4 stars on GitHub - 1 maintainer
inpystem 0.1.1
A python library for STEM acquisition inpainting.5 versions - Latest release: about 4 years ago - 54 downloads last month - 4 stars on GitHub - 1 maintainer
smlmvis 0.1.0
Superresolution visualization of 3D protein localization data from a range of microscopes6 versions - Latest release: 12 months ago - 1 dependent repositories - 34 downloads last month - 5 stars on GitHub - 1 maintainer
napari-apr-viewer 1.0.1
A simple plugin to view APR images in napari6 versions - Latest release: 7 months ago - 1 dependent repositories - 59 downloads last month - 5 stars on GitHub - 1 maintainer
libertem-blobfinder 0.6.1
LiberTEM correlation and refinement library5 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 329 downloads last month - 5 stars on GitHub - 2 maintainers
tigerasi 0.0.26
a lightweight python driver for ASI brand Tiger Controllers21 versions - Latest release: 6 months ago - 157 downloads last month - 5 stars on GitHub - 1 maintainer
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 2 maintainers
multifocal-stitching 0.2.1
Algorithms and tools for stitching microscopy images taken at different focal lengths4 versions - Latest release: 10 months ago - 42 downloads last month - 5 stars on GitHub - 1 maintainer
microfpga 3.1.2
FPGA-based platform for the electronic control of microscopes.3 versions - Latest release: about 1 year ago - 25 downloads last month - 5 stars on GitHub - 1 maintainer
cellocity 1.0.0
Velocity and vector analysis of microscopy data9 versions - Latest release: over 3 years ago - 1 dependent repositories - 45 downloads last month - 6 stars on GitHub - 1 maintainer
empiar-depositor 1.6b30
Script for depositing the data into EMPIAR using EMPIAR API27 versions - Latest release: 10 months ago - 2 dependent repositories - 80 downloads last month - 6 stars on GitHub - 2 maintainers
holospy 0.1.1
Analysis of (off-axis) electron holography data with HyperSpy.4 versions - Latest release: 6 months ago - 1 dependent package - 432 downloads last month - 6 stars on GitHub - 1 maintainer
uc2-rest 2.1.0
This pacage will help you to drive the ESP32-driven microscopy control modules from UC235 versions - Latest release: about 1 year ago - 1 dependent package - 814 downloads last month - 7 stars on GitHub - 1 maintainer
czitools 0.7.0
Tools to simplify reading CZI (Carl Zeiss Image) meta and pixel data26 versions - Latest release: 11 days ago - 293 downloads last month - 7 stars on GitHub - 1 maintainer
napari-psf-analysis 1.1.3
A plugin to analyse point spread functions (PSFs).16 versions - Latest release: 29 days ago - 1 dependent repositories - 147 downloads last month - 7 stars on GitHub - 1 maintainer
nis2pyr 0.6.2
Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 100 downloads last month - 7 stars on GitHub - 1 maintainer
pyminflux 0.4.1
Reader, processor, and viewer of MINFLUX raw data.8 versions - Latest release: 18 days ago - 121 downloads last month - 7 stars on GitHub - 1 maintainer
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 346 downloads last month - 7 stars on GitHub - 2 maintainers
dicomslide 0.7.2
Library for reading whole slide images and derived information in DICOM format.4 versions - Latest release: 3 months ago - 36 downloads last month - 7 stars on GitHub - 2 maintainers
napari-czann-segment 0.0.18
Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files9 versions - Latest release: 8 months ago - 115 downloads last month - 7 stars on GitHub - 1 maintainer
niddl 0.1.8
Neuro Imaging Denoising via Deep Learning (NIDDL)9 versions - Latest release: 11 months ago - 83 downloads last month - 8 stars on GitHub - 1 maintainer
pymmcore-widgets 0.7.1
A set of Qt-based widgets onto the pymmcore-plus model19 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 781 downloads last month - 8 stars on GitHub - 2 maintainers
exspy 0.2
EELS and EDS analysis with the HyperSpy framework2 versions - Latest release: about 2 months ago - 2 dependent packages - 1.28 thousand downloads last month - 8 stars on GitHub - 1 maintainer
pysted 0.0.2
STED image simulator in Python1 version - Latest release: 2 months ago - 202 downloads last month - 8 stars on GitHub - 1 maintainer
Related Keywords
python
54
image-processing
24
image-analysis
17
scientific-formats
16
dask
16
segmentation
15
scientific-computing
15
image-metadata
15
xarray
14
data analysis
14
bioio
13
neuroscience
13
imaging
13
electron-microscopy
12
STEM
11
brain
10
electron microscopy
10
hyperspy
9
electron
9
fluorescence
9
image
9
biology
9
deep-learning
9
registration
9
image analysis
8
analysis
8
numpy
8
spectroscopy
8
materials-science
7
microanalysis
7
napari
7
TEM
7
multi-dimensional
7
scanning
6
microscope
6
holography
6
x-ray-spectroscopy
6
connectomics
6
microscopy-images
6
data-analysis
5
machine-learning
5
hyperspy-extension
5
EM
5
atlases
5
digital holographic microscopy
5
quantitative phase imaging
5
spatial
5
quantitative-phase-imaging
5
digital-pathology
5
pytorch
5
database
5
hyperspectral
5
scientific
4
medical-imaging
4
physical-sciences
4
gui
4
cells
4
fluorescence-microscopy-imaging
4
visualisation
4
data-visualization
4
x-ray
4
cuda
4
gpu
4
electron energy loss spectroscopy
4
SPM
4
scipy
4
cell
4
calcium
4
connectome
4
hmsa
4
file
4
diffraction
4
format
4
tiff
4
nikon
3
nis-elements
3
3d
3
deep learning
3
micro-manager
3
EELS
3
X-ray
3
nd2
3
psf
3
python3
3
visualization
3
boss
3
reconstruction
3
multidimensional
3
statistics
3
physics
3
scattering
3
refractive index
3
computer-vision
3
image-data
3
optics
3
protein
3
model
3
multidimensional-image-processing
3
bioimage-analysis
3
stitching
3