bioinformatics 100 python 43 protein-structure 31 biology 28 dna 25 sequence 18 pdb 17 structure 16 machine-learning 15 deep-learning 14 genomics 14 protein-sequences 13 proteomics 13 computational-biology 13 structural-biology 13 PDB 12 visualization 12 computational biology 11 proteins 10 artificial intelligence 9 alignment 9 machine learning 9 biochemistry 8 ligand 8 rna 8 antibody 7 graph 7 sequence-alignment 7 uniprot 7 protein-design 7 deep learning 6 dynamics 6 analysis 6 protein-language-model 6 chemistry 6 protein-structure-prediction 6 prediction 6 DNA 6 evolution 6 science 5 molecular-dynamics 5 simulation 5 clustering 5 genome 5 RNA 5 bioinformatics-tool 5 database 5 protein-data-bank 5 rosetta 5 pytorch 5 docking 5 gene 5 biopython 5 sequences 4 structural-bioinformatics 4 dataset 4 data science 4 interaction 4 molecule 4 molecular 4 embeddings 4 amino-acids 4 pypi 4 phosphorylation 4 fasta 4 peptides 4 peptide 4 structural biology 4 phylogenetics 4 benchmark 3 design 3 artificial-intelligence 3 phylogeny 3 feature-extraction 3 transformer 3 protein structure prediction 3 research 3 protein-protein-interaction 3 protein language model 3 cheminformatics 3 learning 3 structure-prediction 3 kinase 3 python3 3 cancer 3 protein-analysis 3 virus 3 sequence alignment 3 modeling 3 api 3 esm 3 jupyter-notebook 3 protein-sequence 3 microscopy 3 transformers 3 genetics 3 FASTA 3 mmcif 3 protein engineering 2 data 2