Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microscopy" keyword
Top 2.4% on pypi.org
46 versions - Latest release: 20 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
hyperspy 2.1.0
Multidimensional data analysis toolbox46 versions - Latest release: 20 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
Top 4.0% on pypi.org
326 versions - Latest release: 17 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 17 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 6.79 thousand downloads last month - 311 stars on GitHub - 4 maintainers
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 6.79 thousand downloads last month - 311 stars on GitHub - 4 maintainers
Top 5.1% on pypi.org
29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.83 thousand downloads last month - 43 stars on GitHub - 2 maintainers
nd2reader 3.3.0
A tool for reading ND2 files produced by NIS Elements29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.83 thousand downloads last month - 43 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
aicsimageio 4.14.0
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
ncempy 1.11.1
openNCEM's Python Package19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
ome-types 0.5.1
Python dataclasses for the OME data model38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
41 versions - Latest release: about 1 month ago - 15 dependent packages - 11 dependent repositories - 10.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
nd2 0.10.1
Yet another nd2 (Nikon NIS Elements) file reader41 versions - Latest release: about 1 month ago - 15 dependent packages - 11 dependent repositories - 10.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 323 downloads last month - 19 stars on GitHub - 2 maintainers
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 323 downloads last month - 19 stars on GitHub - 2 maintainers
jicbioimage.core 0.15.0
Python package designed to make it easy to work with bio images.23 versions - Latest release: over 7 years ago - 7 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
sima 1.3.2
Software for analysis of sequential imaging data18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
qpimage 0.9.2
library for manipulating quantitative phase images46 versions - Latest release: 7 months ago - 1 dependent package - 6 dependent repositories - 503 downloads last month - 0 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
atomap 0.4.0
Library for analysing atomic resolution images25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
segmentation 0.2.2
Mixture model segmentation6 versions - Latest release: about 3 years ago - 5 dependent repositories - 373 downloads last month - 1 stars on GitHub - 1 maintainer
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 346 downloads last month - 7 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
72 versions - Latest release: 16 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
pyclesperanto-prototype 0.24.4
GPU-accelerated image processing in python using OpenCL72 versions - Latest release: 16 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
jicbioimage.transform 0.6.0
Python package wrapping commonly used image transformations.10 versions - Latest release: over 7 years ago - 4 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.07 thousand downloads last month - 113 stars on GitHub - 4 maintainers
bg-atlasapi 1.0.3
A lightweight python module to interact with atlases for systems neuroscience10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.07 thousand downloads last month - 113 stars on GitHub - 4 maintainers
pylo 1.0.0
A python program to record image series with Lorentz-TEM.1 version - Latest release: about 3 years ago - 3 dependent repositories - 42 downloads last month - 1 stars on GitHub - 1 maintainer
Top 6.6% on pypi.org
30 versions - Latest release: 12 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem 0.14.0
Open pixelated STEM framework30 versions - Latest release: 12 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
impose 0.4.8
Fit and superimpose shapes from different imaging modalities19 versions - Latest release: 11 days ago - 3 dependent repositories - 193 downloads last month - 1 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
useq-schema 0.4.7
Schema for multi-dimensional microscopy experiments20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
roibuddy 1.0.1
GUI for editing segmentations when using SIMA3 versions - Latest release: over 7 years ago - 3 dependent repositories - 33 downloads last month - 3 maintainers
pie 1.0.1
Colony recognition and growth measurement for microbial imaging2 versions - Latest release: over 1 year ago - 3 dependent repositories - 634 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
10 versions - Latest release: 20 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
hyperspy-gui-ipywidgets 2.0.1
ipywidgets GUI elements for the HyperSpy framework.10 versions - Latest release: 20 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
jicbioimage.segment 0.4.0
Python package designed to make it easy to segment bio images.4 versions - Latest release: about 8 years ago - 3 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
jicbioimage.illustrate 0.6.1
Python package providing a set of tools for creating annotated images and illustrations.10 versions - Latest release: over 7 years ago - 3 dependent repositories - 38 downloads last month - 0 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.53 versions - Latest release: over 7 years ago - 3 dependent repositories - 186 downloads last month - 18 stars on GitHub - 1 maintainer
jicbioimage 0.10.1
Python package designed to make it easy to work with bio images.4 versions - Latest release: about 8 years ago - 3 dependent repositories - 11 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
18 versions - Latest release: 20 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
hyperspy-gui-traitsui 2.0.1
traitsui GUI elements for the HyperSpy framework.18 versions - Latest release: 20 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
Top 8.6% on pypi.org
45 versions - Latest release: 24 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
pymmcore-plus 0.9.5
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine45 versions - Latest release: 24 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
geome 0.0.2
Geometric Learning for Genome Data2 versions - Latest release: 11 months ago - 2 dependent repositories - 34 downloads last month - 15 stars on GitHub - 3 maintainers
jicimagelib 0.3.4
Python package designed to make it easy to work with microscopy images.6 versions - Latest release: over 8 years ago - 2 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
empiar-depositor 1.6b30
Script for depositing the data into EMPIAR using EMPIAR API27 versions - Latest release: 10 months ago - 2 dependent repositories - 80 downloads last month - 6 stars on GitHub - 2 maintainers
fpd 0.2.5
FPD: Fast pixelated detector data storage, analysis and visualisation.20 versions - Latest release: about 2 years ago - 2 dependent repositories - 135 downloads last month - 9 stars on GitLab.com - 1 maintainer
zetastitcher 0.7.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light...7 versions - Latest release: almost 2 years ago - 2 dependent repositories - 106 downloads last month - 36 stars on GitHub - 1 maintainer
simtk 0.1.0
sim: structured illumination microscopy1 version - Latest release: over 3 years ago - 2 dependent repositories - 324 downloads last month - 4 stars on GitHub - 1 maintainer
pyhmsa 0.2.0
Python implementation of the MSA / MAS / AMAS Hyper-Dimensional Data File specification10 versions - Latest release: about 5 years ago - 2 dependent repositories - 102 downloads last month - 2 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
pyxem 0.17.0
multi-dimensional diffraction microscopy26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
naclib 1.1.0
Non-Affine Corrections on microscopy images using S/T Polynomial Decomposition5 versions - Latest release: about 1 year ago - 2 dependent repositories - 22 downloads last month - 0 stars on GitHub - 1 maintainer
utoolbox-core 0.0.22
Core functions for uToolbox.49 versions - Latest release: almost 4 years ago - 2 dependent repositories - 274 downloads last month - 3 stars on GitHub - 1 maintainer
qpsphere 0.5.9
library for analyzing spherical objects in phase imaging28 versions - Latest release: about 2 years ago - 2 dependent repositories - 310 downloads last month - 4 stars on GitHub - 2 maintainers
ashlar 1.18.0
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration34 versions - Latest release: 4 months ago - 2 dependent repositories - 338 downloads last month - 111 stars on GitHub - 1 maintainer
bmlab 0.8.0
Library for Brillouin microscopy data analysis37 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 350 downloads last month - 2 stars on GitHub - 2 maintainers
pyrastitcher 0.0.1
Provides a Python interface to the Terastitcher program.1 version - Latest release: about 8 years ago - 2 dependent repositories - 10 downloads last month - 1 stars on GitHub - 1 maintainer
pyapr 1.0.7
Content-adaptive image processing using the Adaptive Particle Representation11 versions - Latest release: 7 months ago - 2 dependent packages - 1 dependent repositories - 737 downloads last month - 14 stars on GitHub - 1 maintainer
pymontecarlo-penepma 1.0.0
Interface of Monte Carlo simulation program PENEPMA with pyMonteCarlo1 version - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 20 stars on GitHub - 1 maintainer
pyhmsa-gui 0.1.5
Graphical components to represent HMSA specification5 versions - Latest release: over 8 years ago - 1 dependent repositories - 58 downloads last month - 0 stars on GitHub - 1 maintainer
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data108 versions - Latest release: 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
microscpsf-py 0.2
Gibson-Lanni PSF calculation code.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 34 stars on GitHub - 1 maintainer
atomai 0.7.8
Deep and machine learning for atom-resolved data29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
mate-for-dummies 0.5.2
MATE for Dummies. Scienta Omicron MATE Scripting System in Python3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 26 downloads last month - 1 maintainer
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment1 version - Latest release: about 2 years ago - 1 dependent repositories - 9 downloads last month - 47 stars on GitHub - 1 maintainer
merlin-interface 0.0.5
Library for interfacing with the Merlin Medipix3 readout software over the TCP/IP API3 versions - Latest release: over 4 years ago - 1 dependent repositories - 28 downloads last month - 4 stars on GitLab.com - 1 maintainer
c7m 0.1.2
Module for analysis of high-throughput, fluorescence, wide-field microscopy images.3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 1 maintainer
pymmcore-widgets 0.7.1
A set of Qt-based widgets onto the pymmcore-plus model19 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 781 downloads last month - 8 stars on GitHub - 2 maintainers
qiber3d 0.7.0
Automated quantification of fibrous networks3 versions - Latest release: over 2 years ago - 1 dependent repositories - 31 downloads last month - 9 stars on GitHub - 1 maintainer
napari-apr-viewer 1.0.1
A simple plugin to view APR images in napari6 versions - Latest release: 7 months ago - 1 dependent repositories - 59 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
cellocity 1.0.0
Velocity and vector analysis of microscopy data9 versions - Latest release: over 3 years ago - 1 dependent repositories - 45 downloads last month - 6 stars on GitHub - 1 maintainer
utoolbox 0.6.7
Metapackage for uToolbox, a Python image processing package for LLSM.79 versions - Latest release: almost 4 years ago - 1 dependent repositories - 391 downloads last month - 0 stars on GitHub - 1 maintainer
pco 2.1.2
This class provides methods for using pco cameras.10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 499 downloads last month - 1 maintainer
hyperspyui 1.3.1
Hyperspy Graphical User Interface14 versions - Latest release: about 1 year ago - 1 dependent repositories - 230 downloads last month - 25 stars on GitHub - 2 maintainers
libertem-live 0.2.1
Live processing with LiberTEM3 versions - Latest release: about 1 year ago - 1 dependent repositories - 52 downloads last month - 11 stars on GitHub - 3 maintainers
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...24 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 18 stars on GitHub - 1 maintainer
napari-micromanager 0.1.0
Micro-Manager GUI interface in napari.7 versions - Latest release: 3 months ago - 1 dependent repositories - 93 downloads last month - 57 stars on GitHub - 1 maintainer
clesperanto 0.1.3
A graphical user interface for clesperanto based on napari4 versions - Latest release: over 2 years ago - 1 dependent repositories - 61 downloads last month - 197 stars on GitHub - 1 maintainer
psfmodels 0.3.3
Scalar and vectorial models of the microscope point spread function (PSF).6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 689 downloads last month - 33 stars on GitHub - 1 maintainer
nis2pyr 0.6.2
Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 100 downloads last month - 7 stars on GitHub - 1 maintainer
libertem-blobfinder 0.6.1
LiberTEM correlation and refinement library5 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 329 downloads last month - 5 stars on GitHub - 2 maintainers
tomosuitepy 0.0.2
TomoSuitePY is a culmination of machine learning networks and data preparation methods for those ...1 version - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
bioio-base 1.0.0
Typing, base classes, and more for BioIO projects.6 versions - Latest release: 6 months ago - 13 dependent packages - 1 dependent repositories - 6.31 thousand downloads last month - 0 stars on GitHub - 2 maintainers
nanomesh 0.9.1
Creates 3d meshes from microscopy experimental data10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 361 downloads last month - 26 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
picassosr 0.6.9
A collection of tools for painting super-resolution images32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
colicoords 0.1.5
Create a coordinate system in rod-shaped cells.5 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 72 downloads last month - 24 stars on GitHub - 1 maintainer
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy1 version - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 19 stars on GitHub - 1 maintainer
gpim 0.3.9
Gaussian processes for image analysis14 versions - Latest release: about 3 years ago - 1 dependent repositories - 70 downloads last month - 55 stars on GitHub - 1 maintainer
napari-psf-analysis 1.1.3
A plugin to analyse point spread functions (PSFs).16 versions - Latest release: 29 days ago - 1 dependent repositories - 147 downloads last month - 7 stars on GitHub - 1 maintainer
microimage 2.3.1
Python module to open common types of image used in microscopy.1 version - Latest release: over 3 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
pymontecarlo-casino2 1.1.0
Python interface for Monte Carlo simulation program Casino 23 versions - Latest release: over 2 years ago - 1 dependent repositories - 35 downloads last month - 20 stars on GitHub - 1 maintainer
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
napari-aicsimageio 0.7.2
AICSImageIO bindings for napari19 versions - Latest release: almost 2 years ago - 7 dependent packages - 1 dependent repositories - 497 downloads last month - 33 stars on GitHub - 1 maintainer
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 2 maintainers
cytominer-database 0.3.4
A package for storing morphological profiling data.11 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 611 downloads last month - 9 stars on GitHub - 5 maintainers
spiepy 0.2.1
SPIEPy (Scanning Probe Image Enchanter using Python) is a Python library to improve automatic pro...5 versions - Latest release: 6 months ago - 1 dependent repositories - 52 downloads last month - 1 maintainer
microscopemetrics 0.2.2
A package providing analysis routines to measure the performance of micrsocopes used in biomedica...4 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
pyhmsa-matlab 0.1.0
UNKNOWN1 version - Latest release: over 8 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
feature-based-registration-bioinfotongli 2.0.1 removed
Feature-spot-based image registration for fluorescence microscopy images2 versions - Latest release: about 2 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
optical-flow-registration-bioinfotongli 1.0.0 removed
Optical-flow-based image registration for fluorescence microscopy images1 version - Latest release: about 2 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
multi-locus-analysis 0.1.0
Utilities for analyzing particle trajectories15 versions - Latest release: over 3 years ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
tiftool 0.2.4
tiftool22 versions - Latest release: almost 4 years ago - 1 dependent repositories - 74 downloads last month - 1 maintainer
fpd-data-processing 0.2.1
Library for processing scanning transmission electron microscopy data acquired using a fast pixel...2 versions - Latest release: over 6 years ago - 1 dependent repositories - 20 downloads last month - 1 maintainer
rosettasciio 0.4
Reading and writing scientific file formats4 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 13.4 thousand downloads last month - 42 stars on GitHub - 1 maintainer
imagedataextractor 2.0.4
imagedataextractor is a Python library for electron microscopy image quantification.6 versions - Latest release: about 3 years ago - 1 dependent repositories - 54 downloads last month - 12 stars on GitHub - 2 maintainers
bioimage 0.1.3
bioimage - library to make working with biomedical images more comfortable14 versions - Latest release: over 2 years ago - 1 dependent repositories - 72 downloads last month - 1 maintainer
blitzcurve 0.0.2
Time-resolved fluorescence anisotropy analysis.1 version - Latest release: about 6 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
qpformat 0.14.4
library for opening quantitative phase imaging data47 versions - Latest release: over 1 year ago - 1 dependent repositories - 392 downloads last month - 1 stars on GitHub - 2 maintainers
brainatlas-api 0.0.2rc0
A lightweight python module to interact with atlases for systems neuroscience4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 32 downloads last month - 112 stars on GitHub - 3 maintainers
cellfinder-core 1.0.0
Automated 3D cell detection in large microscopy images32 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 352 downloads last month - 19 stars on GitHub - 1 maintainer
scanpatterns 0.2.0
Parametric patterns for laser scanning microscopy4 versions - Latest release: about 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
python
54
image-processing
24
image-analysis
17
scientific-formats
16
dask
16
scientific-computing
15
image-metadata
15
segmentation
15
xarray
14
data analysis
14
neuroscience
13
bioio
13
imaging
13
electron-microscopy
12
STEM
11
electron microscopy
10
brain
10
biology
9
registration
9
electron
9
fluorescence
9
image
9
deep-learning
9
hyperspy
9
numpy
8
analysis
8
spectroscopy
8
image analysis
8
microanalysis
7
multi-dimensional
7
materials-science
7
TEM
7
napari
7
microscopy-images
6
scanning
6
holography
6
x-ray-spectroscopy
6
connectomics
6
microscope
6
atlases
5
hyperspy-extension
5
digital-pathology
5
quantitative-phase-imaging
5
quantitative phase imaging
5
digital holographic microscopy
5
database
5
EM
5
spatial
5
machine-learning
5
hyperspectral
5
pytorch
5
data-analysis
5
SPM
4
cells
4
medical-imaging
4
physical-sciences
4
file
4
data-visualization
4
format
4
scipy
4
tiff
4
x-ray
4
diffraction
4
calcium
4
connectome
4
fluorescence-microscopy-imaging
4
visualisation
4
gui
4
cell
4
cuda
4
scientific
4
hmsa
4
gpu
4
electron energy loss spectroscopy
4
hdf5
3
psf
3
visualization
3
micro-manager
3
statistics
3
eds
3
eels
3
monte-carlo-simulation
3
X-ray
3
python3
3
napari-plugin
3
boss
3
stitching
3
optics
3
reconstruction
3
refractive index
3
scattering
3
bioimage-analysis
3
3d
3
physics
3
probe
3
EELS
3
model
3
multidimensional
3
image-data
3
multidimensional-image-processing
3