Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microscopy" keyword
czitools 0.7.0
Tools to simplify reading CZI (Carl Zeiss Image) meta and pixel data26 versions - Latest release: 2 days ago - 293 downloads last month - 7 stars on GitHub - 1 maintainer
impose 0.4.8
Fit and superimpose shapes from different imaging modalities18 versions - Latest release: 3 days ago - 3 dependent repositories - 237 downloads last month - 1 stars on GitHub - 2 maintainers
Top 6.6% on pypi.org
30 versions - Latest release: 3 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem 0.14.0
Open pixelated STEM framework30 versions - Latest release: 3 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
cellfinder 1.2.0
Automated 3D cell detection in large microscopy images97 versions - Latest release: 4 days ago - 3 dependent packages - 2.46 thousand downloads last month - 170 stars on GitHub - 2 maintainers
brainglobe-atlasapi 2.0.6
A lightweight python module to interact with and generate atlases for systems neuroscience.7 versions - Latest release: 4 days ago - 8 dependent packages - 5.14 thousand downloads last month - 112 stars on GitHub - 3 maintainers
brainreg 1.0.9
Automated multi-atlas whole-brain microscopy registration45 versions - Latest release: 4 days ago - 6 dependent packages - 1 dependent repositories - 1.6 thousand downloads last month - 108 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
72 versions - Latest release: 7 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
pyclesperanto-prototype 0.24.4
GPU-accelerated image processing in python using OpenCL72 versions - Latest release: 7 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
326 versions - Latest release: 8 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 8 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
pyminflux 0.4.1
Reader, processor, and viewer of MINFLUX raw data.8 versions - Latest release: 9 days ago - 121 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
18 versions - Latest release: 11 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
hyperspy-gui-traitsui 2.0.1
traitsui GUI elements for the HyperSpy framework.18 versions - Latest release: 11 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
46 versions - Latest release: 11 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
hyperspy 2.1.0
Multidimensional data analysis toolbox46 versions - Latest release: 11 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
Top 7.9% on pypi.org
10 versions - Latest release: 11 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
hyperspy-gui-ipywidgets 2.0.1
ipywidgets GUI elements for the HyperSpy framework.10 versions - Latest release: 11 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
Top 8.6% on pypi.org
45 versions - Latest release: 15 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
pymmcore-plus 0.9.5
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine45 versions - Latest release: 15 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
microjson 0.1.11
MicroJSON is a library for validating, parsing, and manipulating MicroJSON data.7 versions - Latest release: 20 days ago - 41 downloads last month - 2 maintainers
napari-psf-analysis 1.1.3
A plugin to analyse point spread functions (PSFs).16 versions - Latest release: 20 days ago - 1 dependent repositories - 147 downloads last month - 7 stars on GitHub - 1 maintainer
palom 2024.4.1
Piecewise alignment for layers of mosaics21 versions - Latest release: 20 days ago - 1 dependent package - 1 dependent repositories - 177 downloads last month - 16 stars on GitHub - 1 maintainer
nellie 0.1.8
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cel...8 versions - Latest release: 23 days ago - 339 downloads last month - 26 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
41 versions - Latest release: 27 days ago - 15 dependent packages - 11 dependent repositories - 12.1 thousand downloads last month - 45 stars on GitHub - 1 maintainer
nd2 0.10.1
Yet another nd2 (Nikon NIS Elements) file reader41 versions - Latest release: 27 days ago - 15 dependent packages - 11 dependent repositories - 12.1 thousand downloads last month - 45 stars on GitHub - 1 maintainer
libertem-blobfinder 0.6.1
LiberTEM correlation and refinement library5 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 329 downloads last month - 5 stars on GitHub - 2 maintainers
cucim-cu11 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 1 month ago - 231 downloads last month - 311 stars on GitHub - 2 maintainers
cucim-cu12 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 1 month ago - 2 dependent packages - 2.46 thousand downloads last month - 311 stars on GitHub - 2 maintainers
navigate-micro 0.0.5
Open source, smart, light-sheet microscopy control software.5 versions - Latest release: about 1 month ago - 38 downloads last month - 13 stars on GitHub - 1 maintainer
exspy 0.2
EELS and EDS analysis with the HyperSpy framework2 versions - Latest release: about 1 month ago - 2 dependent packages - 1.28 thousand downloads last month - 8 stars on GitHub - 1 maintainer
fastddm 0.3.10
A Python/C++ library for the analysis of Differential Dynamic Microscopy experiments5 versions - Latest release: about 1 month ago - 344 downloads last month - 2 stars on GitHub - 1 maintainer
frc 0.1.1
Library for computing Fourier Ring Correlation (FRC) curves and using them to determine image res...2 versions - Latest release: about 2 months ago - 1 dependent repositories - 70 downloads last month - 1 stars on GitHub - 1 maintainer
rosettasciio 0.4
Reading and writing scientific file formats4 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 13.4 thousand downloads last month - 42 stars on GitHub - 1 maintainer
bioio-sldy 1.0.1
A BioIO reader plugin for reading 3i slidebook (SLDY) images.4 versions - Latest release: about 2 months ago - 299 downloads last month - 0 stars on GitHub - 2 maintainers
biom3d 0.0.38
Biom3d. Framework for easy-to-use biomedical image segmentation.39 versions - Latest release: about 2 months ago - 713 downloads last month - 17 stars on GitHub - 1 maintainer
llspy 0.5.1
Lattice Light Sheet Processing Tools.2 versions - Latest release: about 2 months ago - 1 dependent repositories - 29 downloads last month - 25 stars on GitHub - 1 maintainer
bioio 1.0.1
Image reading, metadata management, and image writing for Microscopy images in Python4 versions - Latest release: about 2 months ago - 3 dependent packages - 285 downloads last month - 16 stars on GitHub - 2 maintainers
pysted 0.0.2
STED image simulator in Python1 version - Latest release: about 2 months ago - 202 downloads last month - 8 stars on GitHub - 1 maintainer
bandit-optimization 0.0.1
Bandit optimization algorithms for microscopy1 version - Latest release: about 2 months ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data108 versions - Latest release: 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
ome-types 0.5.1
Python dataclasses for the OME data model38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
pycytominer 1.1.0
Python package for processing image-based profiling data5 versions - Latest release: 2 months ago - 1 dependent repositories - 485 downloads last month - 60 stars on GitHub - 1 maintainer
pymmcore-widgets 0.7.1
A set of Qt-based widgets onto the pymmcore-plus model19 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 781 downloads last month - 8 stars on GitHub - 2 maintainers
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...24 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 18 stars on GitHub - 1 maintainer
symbac 0.4.0
A package for generating synthetic images of bactera in phase contrast or fluorescence. Used for ...13 versions - Latest release: 2 months ago - 1 dependent repositories - 68 downloads last month - 17 stars on GitHub - 1 maintainer
napari-micromanager 0.1.0
Micro-Manager GUI interface in napari.7 versions - Latest release: 2 months ago - 1 dependent repositories - 93 downloads last month - 57 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
ncempy 1.11.1
openNCEM's Python Package19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
pco 2.1.2
This class provides methods for using pco cameras.10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 499 downloads last month - 1 maintainer
acquifer 2.0.0
Utilitary functions when working with image datasets acquired with an ACQUIFER Imaging Machine mi...2 versions - Latest release: 3 months ago - 1 dependent package - 58 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
picassosr 0.6.9
A collection of tools for painting super-resolution images32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
dicomslide 0.7.2
Library for reading whole slide images and derived information in DICOM format.4 versions - Latest release: 3 months ago - 36 downloads last month - 7 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
atomap 0.4.0
Library for analysing atomic resolution images25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
cenfind 0.14.0
Score cells for centrioles in IF data32 versions - Latest release: 3 months ago - 159 downloads last month - 1 stars on GitHub - 1 maintainer
tttrlib 0.24.3
Read, write & process time-tagged time-resolved (TTTR) data.5 versions - Latest release: 3 months ago - 307 downloads last month - 18 stars on GitHub - 1 maintainer
ashlar 1.18.0
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration34 versions - Latest release: 4 months ago - 2 dependent repositories - 338 downloads last month - 111 stars on GitHub - 1 maintainer
cell-tracking-bc 2024.1 💰
Base Classes for Cell Tracking in Microscopy89 versions - Latest release: 4 months ago - 739 downloads last month - 6,321 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.26 thousand downloads last month - 111 stars on GitHub - 4 maintainers
bg-atlasapi 1.0.3
A lightweight python module to interact with atlases for systems neuroscience10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.26 thousand downloads last month - 111 stars on GitHub - 4 maintainers
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
sitkibex 0.5.1
Image registration for iterative fluorescence microscopy3 versions - Latest release: 4 months ago - 98 downloads last month - 16 stars on GitHub - 2 maintainers
Top 6.3% on pypi.org
26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
pyxem 0.17.0
multi-dimensional diffraction microscopy26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
doubleblind 1.1.1 💰
Automatically and reversibly replace file names with random strings to help experimenters quantif...4 versions - Latest release: 4 months ago - 48 downloads last month - 0 stars on GitHub - 1 maintainer
brainreg-napari 0.1.4
Multi-atlas whole-brain microscopy registration12 versions - Latest release: 4 months ago - 2 dependent packages - 140 downloads last month - 13 stars on GitHub - 1 maintainer
cellfinder-core 1.0.0
Automated 3D cell detection in large microscopy images32 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 1.32 thousand downloads last month - 19 stars on GitHub - 1 maintainer
fpbase 0.0.1rc0
Stub for future FPbase API1 version - Latest release: 5 months ago - 12 downloads last month - 62 stars on GitHub - 1 maintainer
bioio-nd2 1.0.0
A BioIO reader plugin for reading ND2 images.2 versions - Latest release: 5 months ago - 360 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-base 1.0.0
Typing, base classes, and more for BioIO projects.6 versions - Latest release: 5 months ago - 13 dependent packages - 1 dependent repositories - 6.31 thousand downloads last month - 0 stars on GitHub - 2 maintainers
bioio-tifffile 1.0.0
A BioIO reader plugin for reading TIFFs using Tifffile2 versions - Latest release: 6 months ago - 2 dependent packages - 586 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-tiff-glob 1.0.0
A BioIo reader for reading Tiff Glob images2 versions - Latest release: 6 months ago - 39 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-ome-tiled-tiff 1.0.0
A BioIO reader plugin for reading tiled ome.tiff images.2 versions - Latest release: 6 months ago - 38 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-bioformats 1.0.0
A BioIO reader for reading bioformats formatted images.2 versions - Latest release: 6 months ago - 1 dependent package - 4.34 thousand downloads last month - 0 stars on GitHub - 1 maintainer
bioio-imageio 1.0.0
A BioIO reader plugin for reading simple image formats using imageio.2 versions - Latest release: 6 months ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-lif 1.0.0
A BioIO reader plugin for reading LIF (Leica Image File) images.2 versions - Latest release: 6 months ago - 587 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-dv 1.0.0
A BioIO reader plugin for reading Digital Video (DV) files.2 versions - Latest release: 6 months ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-ome-tiff 1.0.0
A BioIO reader plugin for reading tiff files in the OME format.2 versions - Latest release: 6 months ago - 2 dependent packages - 613 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-czi 1.0.0
A Bioio reader plugin for reading czi images.2 versions - Latest release: 6 months ago - 1 dependent package - 592 downloads last month - 0 stars on GitHub - 1 maintainer
holospy 0.1.1
Analysis of (off-axis) electron holography data with HyperSpy.4 versions - Latest release: 6 months ago - 1 dependent package - 432 downloads last month - 6 stars on GitHub - 1 maintainer
tigerasi 0.0.26
a lightweight python driver for ASI brand Tiger Controllers21 versions - Latest release: 6 months ago - 93 downloads last month - 5 stars on GitHub - 1 maintainer
spiepy 0.2.1
SPIEPy (Scanning Probe Image Enchanter using Python) is a Python library to improve automatic pro...5 versions - Latest release: 6 months ago - 1 dependent repositories - 52 downloads last month - 1 maintainer
napari-apr-viewer 1.0.1
A simple plugin to view APR images in napari6 versions - Latest release: 6 months ago - 1 dependent repositories - 59 downloads last month - 5 stars on GitHub - 1 maintainer
pyapr 1.0.7
Content-adaptive image processing using the Adaptive Particle Representation11 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 737 downloads last month - 14 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
aicsimageio 4.14.0
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.37 thousand downloads last month - 311 stars on GitHub - 4 maintainers
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.37 thousand downloads last month - 311 stars on GitHub - 4 maintainers
qpimage 0.9.2
library for manipulating quantitative phase images46 versions - Latest release: 7 months ago - 1 dependent package - 6 dependent repositories - 503 downloads last month - 0 stars on GitHub - 2 maintainers
cellseg_models_pytorch 0.1.24
Python library for 2D cell/nuclei instance segmentation models written with PyTorch.24 versions - Latest release: 7 months ago - 250 downloads last month - 60 stars on GitHub - 1 maintainer
atomai 0.7.8
Deep and machine learning for atom-resolved data29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
useq-schema 0.4.7
Schema for multi-dimensional microscopy experiments20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
napari-czann-segment 0.0.18
Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files9 versions - Latest release: 8 months ago - 115 downloads last month - 7 stars on GitHub - 1 maintainer
pycudadecon 0.4.1
Python wrapper for CUDA-accelerated 3D deconvolution3 versions - Latest release: 8 months ago - 1 dependent repositories - 49 downloads last month - 55 stars on GitHub - 1 maintainer
imagej-rolling-ball 2023.8.6
Python wrapper for ImageJ's rolling ball background subtraction using pyimagej7 versions - Latest release: 9 months ago - 40 downloads last month - 0 stars on GitHub - 1 maintainer
microscopemetrics-omero 0.2.0
A package to compute metrics on OMERO images using micrsocope-metrics1 version - Latest release: 9 months ago - 9 downloads last month - 1 maintainer
microscopemetrics 0.2.2
A package providing analysis routines to measure the performance of micrsocopes used in biomedica...4 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
empiar-depositor 1.6b30
Script for depositing the data into EMPIAR using EMPIAR API27 versions - Latest release: 9 months ago - 2 dependent repositories - 126 downloads last month - 6 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
86 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data86 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
multifocal-stitching 0.2.1
Algorithms and tools for stitching microscopy images taken at different focal lengths4 versions - Latest release: 10 months ago - 42 downloads last month - 5 stars on GitHub - 1 maintainer
niddl 0.1.8
Neuro Imaging Denoising via Deep Learning (NIDDL)9 versions - Latest release: 11 months ago - 83 downloads last month - 8 stars on GitHub - 1 maintainer
geome 0.0.2
Geometric Learning for Genome Data2 versions - Latest release: 11 months ago - 2 dependent repositories - 34 downloads last month - 15 stars on GitHub - 3 maintainers
smlmvis 0.1.0
Superresolution visualization of 3D protein localization data from a range of microscopes6 versions - Latest release: 12 months ago - 1 dependent repositories - 34 downloads last month - 5 stars on GitHub - 1 maintainer
deepflash2 0.2.3
A Deep learning pipeline for segmentation of fluorescent labels in microscopy images27 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 258 downloads last month - 56 stars on GitHub - 1 maintainer
pathml 2.1.1
Tools for computational pathology15 versions - Latest release: 12 months ago - 1 dependent repositories - 305 downloads last month - 364 stars on GitHub - 2 maintainers
naclib 1.1.0
Non-Affine Corrections on microscopy images using S/T Polynomial Decomposition5 versions - Latest release: about 1 year ago - 2 dependent repositories - 20 downloads last month - 0 stars on GitHub - 1 maintainer
libertem-live 0.2.1
Live processing with LiberTEM3 versions - Latest release: about 1 year ago - 1 dependent repositories - 52 downloads last month - 11 stars on GitHub - 3 maintainers
psfmodels 0.3.3
Scalar and vectorial models of the microscope point spread function (PSF).6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 689 downloads last month - 33 stars on GitHub - 1 maintainer
hyperspyui 1.3.1
Hyperspy Graphical User Interface14 versions - Latest release: about 1 year ago - 1 dependent repositories - 230 downloads last month - 25 stars on GitHub - 2 maintainers
basicpy 1.1.0
A python package for background and shading correction of optical microscopy images7 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 483 downloads last month - 53 stars on GitHub - 3 maintainers
access2thematrix 0.4.4
Scienta Omicron (NanoScience) (NanoTechnology) MATRIX Control System result file accessing tool12 versions - Latest release: about 1 year ago - 1 dependent package - 133 downloads last month - 1 maintainer
uc2-rest 2.1.0
This pacage will help you to drive the ESP32-driven microscopy control modules from UC235 versions - Latest release: about 1 year ago - 1 dependent package - 814 downloads last month - 7 stars on GitHub - 1 maintainer
napari-lattice 0.2.7
Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.13 versions - Latest release: about 1 year ago - 127 downloads last month - 11 stars on GitHub - 1 maintainer
Related Keywords
python
54
image-processing
24
scientific-formats
16
dask
16
image-analysis
16
segmentation
15
image-metadata
15
scientific-computing
15
data analysis
14
xarray
14
imaging
13
neuroscience
13
bioio
13
electron-microscopy
12
STEM
11
brain
10
electron microscopy
10
fluorescence
9
hyperspy
9
electron
9
registration
9
image
9
deep-learning
9
biology
9
image analysis
8
numpy
8
analysis
8
spectroscopy
8
microanalysis
7
TEM
7
materials-science
7
napari
7
multi-dimensional
7
holography
6
x-ray-spectroscopy
6
scanning
6
connectomics
6
microscopy-images
6
microscope
6
spatial
5
EM
5
hyperspy-extension
5
data-analysis
5
machine-learning
5
digital-pathology
5
quantitative phase imaging
5
quantitative-phase-imaging
5
hyperspectral
5
database
5
digital holographic microscopy
5
atlases
5
pytorch
5
visualisation
4
hmsa
4
x-ray
4
diffraction
4
gpu
4
scipy
4
electron energy loss spectroscopy
4
cuda
4
scientific
4
cell
4
physical-sciences
4
tiff
4
SPM
4
data-visualization
4
fluorescence-microscopy-imaging
4
connectome
4
calcium
4
cells
4
gui
4
format
4
medical-imaging
4
file
4
scattering
3
psf
3
metadata
3
nd2
3
nikon
3
nis-elements
3
computer-vision
3
image-data
3
multidimensional-image-processing
3
nvidia
3
refractive index
3
hdf5
3
eds
3
eels
3
physics
3
stitching
3
X-ray
3
optics
3
reconstruction
3
deep learning
3
probe
3
boss
3
3d
3
biomedical-image-processing
3
EELS
3
protein
3