Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "minimap2" keyword

pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
sequana-mapper 1.2.1
A multi-sample mapper to map reads onto a reference
24 versions - Latest release: 3 months ago - 1 dependent repositories - 85 downloads last month - 5 stars on GitHub - 2 maintainers
preqclr 2.0
Quality control tool for long read sequencing data
1 version - Latest release: about 6 years ago - 1 dependent repositories - 16 downloads last month - 4 stars on GitHub - 2 maintainers
sequana-revcomp 1.1.0
reverse complement a set of FastQ files
8 versions - Latest release: 5 months ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 2 maintainers
preqc-lr 1.2
Quality control tool for long read sequencing data
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 18 downloads last month - 4 stars on GitHub - 2 maintainers
sequana-variant-calling 1.2.0
A multi-sample variant calling pipeline
24 versions - Latest release: 3 months ago - 1 dependent repositories - 104 downloads last month - 0 stars on GitHub - 1 maintainer
readpaf 0.0.10
minimap2 PAF file reader
10 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 184 downloads last month - 4 stars on GitHub - 2 maintainers
cstag 1.0.5
Python module to manipulate the minimap2's CS tag
25 versions - Latest release: 7 months ago - 2 dependent packages - 1 dependent repositories - 647 downloads last month - 6 stars on GitHub - 2 maintainers
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.
10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
minimappers2 0.1.3
A Python wrapper for minimap2-rs
4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 7 python 4 alignment 3 snakemake 3 NGS 3 sequana 3 bwa 3 rust 2 quality 2 pacbio 2 oxford-nanopore 2 long-read 2 paf 2 pairwise-mapping-format 1 library 1 pandas 1 parser 1 cstag 1 sam 1 sequence 1 mapping 1 ffi 1 genomics 1 longread 1 sequence-alignment 1 spliced-alignment 1