Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "oxford-nanopore" keyword
swan-vis 1.0.3
swan is a tool for visualizing and analyzing transcript isoforms14 versions - Latest release: almost 4 years ago - 1 dependent repositories - 65 downloads last month - 46 stars on GitHub - 1 maintainer
pistis 0.3.4
Quality control plotting for long reads11 versions - Latest release: about 3 years ago - 1 dependent repositories - 53 downloads last month - 10 stars on GitHub - 1 maintainer
boss_runs 0.1.0
Dynamic, adaptive sampling during nanopore sequencing1 version - Latest release: 2 months ago - 27 downloads last month - 161 stars on GitHub - 1 maintainer
magnipore 1.2.0 removed
Compares two ONT sequences samples for differential signals cause by mutations and modifications.1 version - Latest release: 10 months ago - 3 stars on GitHub - 1 maintainer
readfish 2024.2.0
ONT adaptive sampling10 versions - Latest release: 6 days ago - 1 dependent repositories - 285 downloads last month - 161 stars on GitHub - 3 maintainers
preqc-lr 1.2
Quality control tool for long read sequencing data2 versions - Latest release: over 6 years ago - 1 dependent repositories - 18 downloads last month - 4 stars on GitHub - 1 maintainer
preqclr 2.0
Quality control tool for long read sequencing data1 version - Latest release: about 6 years ago - 1 dependent repositories - 16 downloads last month - 4 stars on GitHub - 1 maintainer
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: over 5 years ago - 1 dependent repositories - 48 downloads last month - 37 stars on GitHub - 1 maintainer
isonclust 0.0.6
De novo clustering of long-read transcriptome reads.7 versions - Latest release: over 4 years ago - 1 dependent repositories - 72 downloads last month - 42 stars on GitHub - 1 maintainer
helen 0.0.23
RNN based assembly HELEN. It works paired with MarginPolish.19 versions - Latest release: about 4 years ago - 1 dependent repositories - 136 downloads last month - 68 stars on GitHub - 1 maintainer
varvamp 1.2.0
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses22 versions - Latest release: 8 days ago - 334 downloads last month - 19 stars on GitHub - 1 maintainer
pepper-polish 0.1.5
RNN based standalone assembly polisher.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 63 downloads last month - 230 stars on GitHub - 1 maintainer
cutesv 2.1.1
Long-read-based human genomic structural variation detection with cuteSV20 versions - Latest release: about 1 month ago - 1 dependent repositories - 297 downloads last month - 204 stars on GitHub - 1 maintainer
read5 1.2.4
Wrapper to read fast5, slow5, blow5 and pod5 files.10 versions - Latest release: 2 months ago - 1 dependent package - 64 downloads last month - 8 stars on GitHub - 1 maintainer
read5-ont 1.2.4
Wrapper to read fast5 and pod5 files.4 versions - Latest release: 2 months ago - 34 downloads last month - 8 stars on GitHub - 1 maintainer
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 4 years ago - 1 dependent repositories - 52 downloads last month - 37 stars on GitHub - 1 maintainer
rrequested-demultiplex 1.2.0
rrequested-demultiplex: A versatile package to preprocess raw basecalled reads with quality and s...1 version - Latest release: 5 months ago - 8 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
9
pacbio
6
genomics
6
ont
5
long-read
4
nanopore
4
sequencing
4
Nanopore
3
Oxford Nanopore Technologies
3
ONT
3
long-reads
3
slow5
2
read5
2
uncorrected
2
research
2
minimap2
2
quality
2
bioinformatics-pipeline
2
global-health
2
infectious-diseases
2
kmer
2
pathogen
2
plasmid
2
plasmidfinder
2
blow5
2
fast5
2
pod5
2
adaptive-sampling
2
raw data
2
wrapper
2
oxford-nanopore-data
2
raw-data
2
transcriptome
2
pacbio-iso-seq
2
primer-design
1
primer-blast
1
pypi-package
1
python3
1
qpcr
1
primer
1
pcr
1
multiplex-pcr
1
illumina
1
easy-to-use
1
degenerate-primers
1
container
1
consensus-sequences
1
sanger
1
virus
1
assembly-polishing
1
genome-variation
1
pacbio-ccs
1
variant-calling
1
variants
1
pacbio-data
1
structural-variation
1
data-manipulation
1
demultiplexing
1
python
1
python-package
1
raw-signal
1
epitranscriptomics
1
epigenomics
1
comparative-analysis
1
Direct RNA Sequencing
1
MinION
1
nanosherlock
1
magnipore
1
Magnipore
1
quality-control
1
plotting
1
bioinformatics-analysis
1
pistis
1
visualization
1
isoform
1
transcription
1
swan
1
conda
1
ampliconseq
1
amplicons
1
human-genetics
1
genomic-data-analysis
1
genomes
1
genome-sequencing
1
genome-scale-models
1
genome-assembly
1
genome-analysis
1
clustering
1
transcript
1
Technologies
1
Oxford
1
PacBio
1
CCS
1
Iso-Seq
1