pypi.org "pacbio" keyword
View the packages on the pypi.org package registry that are tagged with the "pacbio" keyword.
telometer 1.1
a simple regular expression based method for measuring individual, chromosome-specific telomere l...16 versions - Latest release: 7 months ago - 514 downloads last month - 0 stars on GitHub - 1 maintainer
pistis 0.3.4
Quality control plotting for long reads11 versions - Latest release: about 4 years ago - 1 dependent repositories - 244 downloads last month - 10 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
19 versions - Latest release: 5 days ago - 1 dependent package - 3 dependent repositories - 1.97 thousand downloads last month - 584 stars on GitHub - 3 maintainers
sniffles 2.6.2
A fast structural variation caller for long-read sequencing data19 versions - Latest release: 5 days ago - 1 dependent package - 3 dependent repositories - 1.97 thousand downloads last month - 584 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
104 versions - Latest release: about 2 months ago - 12 dependent packages - 14 dependent repositories - 1.85 thousand downloads last month - 146 stars on GitHub - 1 maintainer
sequana 0.19.1
A set of standalone application and pipelines dedicated to NGS analysis104 versions - Latest release: about 2 months ago - 12 dependent packages - 14 dependent repositories - 1.85 thousand downloads last month - 146 stars on GitHub - 1 maintainer
sequana-pacbio-qc 1.0.1
QC on various type of pacbio data5 versions - Latest release: almost 2 years ago - 1 dependent repositories - 83 downloads last month - 146 stars on GitHub - 1 maintainer
preqc-lr 1.2
Quality control tool for long read sequencing data2 versions - Latest release: over 7 years ago - 1 dependent repositories - 84 downloads last month - 4 stars on GitHub - 1 maintainer
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 5 years ago - 1 dependent repositories - 243 downloads last month - 39 stars on GitHub - 1 maintainer
ccsmeth 0.5.0
Detecting DNA methylation from PacBio CCS reads11 versions - Latest release: about 1 year ago - 1 dependent repositories - 249 downloads last month - 63 stars on GitHub - 1 maintainer
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: over 6 years ago - 1 dependent repositories - 59 downloads last month - 39 stars on GitHub - 1 maintainer
swan-vis 1.0.3
swan is a tool for visualizing and analyzing transcript isoforms14 versions - Latest release: almost 5 years ago - 1 dependent repositories - 284 downloads last month - 54 stars on GitHub - 1 maintainer
sequana-lora 1.0.0
Run assembler (Canu, Flye, Hifiasm) on a set of long read files1 version - Latest release: 18 days ago
mccloud-cli 0.0.8
A command line to assist McCloud users.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 216 downloads last month - 272 stars on GitHub - 2 maintainers
isotools 0.3.4
Framework for the analysis of long read transcriptome sequencing data24 versions - Latest release: almost 2 years ago - 2 dependent repositories - 721 downloads last month - 27 stars on GitHub - 2 maintainers
ipdtools 0.23
PacBio codes isolated and repackaged to work on their in-sillico model5 versions - Latest release: about 1 year ago - 1 dependent repositories - 108 downloads last month - 2 stars on GitHub - 1 maintainer
comptg2 0.2.0
Telomeric allele scoring tool for output from Telogator2.3 versions - Latest release: 6 months ago - 134 downloads last month - 14 stars on GitHub - 1 maintainer
preqclr 2.0
Quality control tool for long read sequencing data1 version - Latest release: about 7 years ago - 1 dependent repositories - 45 downloads last month - 4 stars on GitHub - 1 maintainer
pbcommand 0.3.29 removed
Library and Tools for interfacing to PacBio pbsmrtpipe workflow engine.18 versions - Latest release: almost 9 years ago - 7 dependent repositories - 38 downloads last month - 9 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
9
nanopore
7
oxford-nanopore
6
long-read
4
sequana
3
genomics
3
snakemake
3
de-novo
3
NGS
2
coverage
2
ngs
2
rna-seq
2
sequanix
2
taxonomy
2
variant-calling
2
minimap2
2
quality
2
bioinformatics-pipeline
2
global-health
2
infectious-diseases
2
kmer
2
long-reads
2
pathogen
2
plasmid
2
plasmidfinder
2
research
2
uncorrected
2
assembly
2
telomeres
2
transcriptome
1
pacbio-iso-seq
1
visualization
1
aging
1
dna
1
sequencing
1
isoseq
1
lrts
1
python3
1
splicing-analyses
1
transcriptomics
1
smrt
1
smrtlink
1
longreads
1
telomere
1
workflow
1
cancer
1
nanopores
1
ont
1
pistis
1
bioinformatics-analysis
1
plotting
1
quality-control
1
bioconda
1
ngm-lr
1
structural-variation
1
structural-variations
1
methylation
1
neural network
1
swan
1
transcription
1
isoform
1