Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "sequana" keyword
sequana-variant-calling 1.2.0
A multi-sample variant calling pipeline24 versions - Latest release: 4 months ago - 1 dependent repositories - 131 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-rnaseq 0.19.3
A RNAseq pipeline from raw reads to feature counts44 versions - Latest release: 3 months ago - 1 dependent repositories - 232 downloads last month - 17 stars on GitHub - 2 maintainers
sequana-quality-control 0.10.0
A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix),...5 versions - Latest release: about 2 years ago - 1 dependent repositories - 34 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-pipetools 1.0.1
A set of tools to help building or using Sequana pipelines69 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 923 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-mapper 1.2.1
A multi-sample mapper to map reads onto a reference24 versions - Latest release: 3 months ago - 1 dependent repositories - 113 downloads last month - 5 stars on GitHub - 1 maintainer
sequana-fastqc 1.8.2
A multi-sample fastqc pipeline from Sequana project35 versions - Latest release: 3 months ago - 1 dependent repositories - 275 downloads last month - 3 stars on GitHub - 1 maintainer
sequana-coverage 0.9.1
Parallelise version of sequana_coverage standalone application.3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
sequana-demultiplex 1.5.2
Pipeline that runs bcl2fastq and ease demultiplexing of Sequencing data38 versions - Latest release: 5 months ago - 1 dependent repositories - 169 downloads last month - 3 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
97 versions - Latest release: 2 months ago - 12 dependent packages - 14 dependent repositories - 788 downloads last month - 0 stars on GitHub - 1 maintainer
sequana 0.16.11
A set of standalone application and pipelines dedicated to NGS analysis97 versions - Latest release: 2 months ago - 12 dependent packages - 14 dependent repositories - 788 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-nanomerge 1.5.0
Merge barcoded or non barcoded fastq files generated by Nanopore runs6 versions - Latest release: 6 months ago - 21 downloads last month - 1 stars on GitHub - 1 maintainer
sequana-multicov 1.1.1
Parallelise version of sequana_coverage standalone application.3 versions - Latest release: 12 months ago - 10 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-ribofinder 1.1.1
A multi-sample identification of ribosomal content12 versions - Latest release: 6 months ago - 1 dependent repositories - 42 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-revcomp 1.1.0
reverse complement a set of FastQ files8 versions - Latest release: 5 months ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-multitax 0.12.1
A multi-sample and multi-databases taxonomic analysis using Kraken12 versions - Latest release: 6 months ago - 1 dependent repositories - 32 downloads last month - 1 maintainer
sequana-pacbio-qc 1.0.1
QC on various type of pacbio data5 versions - Latest release: 11 months ago - 1 dependent repositories - 15 downloads last month - 139 stars on GitHub - 1 maintainer
sequana-merge-flowcells 0.9.3
Merge FastQ from different projects (flowcells) into single project1 version - Latest release: over 3 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
sequana-depletion 0.3.0
A pipeline to deplete reads from a given reference3 versions - Latest release: 5 months ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 1 maintainer
sequana-downsampling 0.9.0
downsample NGS data sets5 versions - Latest release: over 1 year ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-bioconvert 1.1.0
description: convert NGS format from one to another using bioconvert5 versions - Latest release: 5 months ago - 1 dependent repositories - 18 downloads last month - 1 stars on GitHub - 1 maintainer
damona 0.12.2
A manager of singularity containers and their singularity recipes (NGS applications)29 versions - Latest release: about 2 months ago - 1 dependent repositories - 150 downloads last month - 5 stars on GitHub - 1 maintainer
Related Keywords
snakemake
19
NGS
11
ngs
5
bwa
3
minimap2
3
coverage
3
taxonomy
2
merge
2
fastq
2
depltion
2
CNV
2
running median
2
pipelines
2
RNAseq
2
RNADiff
2
rna-seq
2
differential analysis
2
kraken
1
pacbio
1
de-novo
1
sequanix
1
variant-calling
1
flowcell
1
depletion
1
singularity
1
manager
1
conda
1
downsampling
1
bioinformatics
1
convertion
1
bioconvert
1
rRNA
1
ribosomal
1
barcode
1
Nanopore
1
demultiplexing
1
base caller
1
Illumina
1
bcl2fastq
1
fastqc
1
short read
1
assembly
1
denovo
1
workflow
1
pipeline
1
differential-analysis
1