Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "biophysics" keyword
pylattice 0.1.3
A python library for lattice light-sheet image analysis5 versions - Latest release: over 5 years ago - 1 dependent repositories - 44 downloads last month - 21 stars on GitHub - 1 maintainer
biskit 2.4.3
A Python platform for structural bioinformatics5 versions - Latest release: almost 8 years ago - 2 dependent repositories - 42 downloads last month - 54 stars on GitHub - 1 maintainer
domb-napari 2024.2.29
napari plugin for analyzing fluorescence-labeled proteins redistribution15 versions - Latest release: 3 months ago - 93 downloads last month - 1 stars on GitHub - 1 maintainer
hipocount-napari 2024.2.5
Quantitative analysis of immunofluorescence images of hippocampal slices4 versions - Latest release: 3 months ago - 23 downloads last month - 1 stars on GitHub - 1 maintainer
odtbrain 0.4.7
Algorithms for diffraction tomography24 versions - Latest release: over 1 year ago - 2 dependent repositories - 153 downloads last month - 35 stars on GitHub - 2 maintainers
phconvert 0.8.2
Convert Beker&Hickl, PicoQuant and other formats to Photon-HDF5.18 versions - Latest release: over 6 years ago - 1 dependent package - 6 dependent repositories - 219 downloads last month - 15 stars on GitHub - 2 maintainers
Top 1.7% on pypi.org
49 versions - Latest release: 5 months ago - 34 dependent packages - 47 dependent repositories - 33.3 thousand downloads last month - 1,233 stars on GitHub - 4 maintainers
mdanalysis 2.7.0
An object-oriented toolkit to analyze molecular dynamics trajectories.49 versions - Latest release: 5 months ago - 34 dependent packages - 47 dependent repositories - 33.3 thousand downloads last month - 1,233 stars on GitHub - 4 maintainers
aims-immune 0.9.2
A software for the analysis of immune repertoires16 versions - Latest release: 2 months ago - 88 downloads last month - 9 stars on GitHub - 1 maintainer
membrane-curvature 1.1.1
MDAnalysis tool to calculate membrane curvature from MD simulations.5 versions - Latest release: 4 months ago - 1 dependent repositories - 73 downloads last month - 27 stars on GitHub - 2 maintainers
solvation-analysis 0.4.0
A toolkit to analyze solvation structure in molecular dynamics trajectories.14 versions - Latest release: 13 days ago - 1 dependent repositories - 217 downloads last month - 37 stars on GitHub - 1 maintainer
jointforces 1.0.5
A Python package to conduct 3D Traction Force Microcopy on multicelluar aggregates (spheroids).6 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 93 downloads last month - 1 maintainer
deerpredict 0.2.0
A package for DEER and PRE predictions based on molecular dynamics ensembles. Can be installed wi...11 versions - Latest release: over 2 years ago - 1 dependent repositories - 90 downloads last month - 8 stars on GitHub - 1 maintainer
bimato 2022.2.1
Bio Matrix Topology (BiMaTo) is a library containing all the biopolymer matrix topology analyses ...5 versions - Latest release: over 1 year ago - 33 downloads last month - 0 stars on GitHub - 1 maintainer
phic 2.0.13
Polymer dynamics deciphered from Hi-C data14 versions - Latest release: 3 months ago - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
kddg 0.29
Database APIs for managing mutageneses, macromolecular complexes, experimental measurements, and ...1 version - Latest release: 9 months ago - 2 dependent repositories - 2 stars on GitHub - 1 maintainer
kif 0.3.4
Python package for MD simulation analysis8 versions - Latest release: 3 months ago - 41 downloads last month - 22 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
16 versions - Latest release: 5 months ago - 3 dependent packages - 8 dependent repositories - 19.8 thousand downloads last month - 104 stars on GitHub - 3 maintainers
pdb2pqr 3.6.2 💰
Automates many of the common tasks of preparing structures for continuum solvation calculations a...16 versions - Latest release: 5 months ago - 3 dependent packages - 8 dependent repositories - 19.8 thousand downloads last month - 104 stars on GitHub - 3 maintainers
mmcif-pdbx 2.0.1
Python utilities for PDBx/mmCIF storage model7 versions - Latest release: about 3 years ago - 3 dependent packages - 3 dependent repositories - 17.4 thousand downloads last month - 6 stars on GitHub - 3 maintainers
memdof 0.1.3
A python package to determine the internal degrees of freedom for a single lipid membrane.1 version - Latest release: about 1 month ago - 102 downloads last month - 1 stars on GitHub - 1 maintainer
hpsandbox 1.0.0b0
Python package to explore the 2D HP model of Chan and Dill.1 version - Latest release: about 1 year ago - 17 downloads last month - 5 stars on GitHub - 1 maintainer
molclustpy 0.1.0
A Python package to analyze multivalent biomolecular clustering.5 versions - Latest release: about 1 year ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
pycapsid 0.5.9
A set of computational tools written in python for the analysis of viral capsids54 versions - Latest release: 8 months ago - 451 downloads last month - 5 stars on GitHub - 2 maintainers
pysawit 0.0.1
Oil Palm Growth and Yield Model1 version - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 19 stars on GitHub - 1 maintainer
pyermine 0.1.2
Estimate Reaction-rates by Markov-based Investigation of Nanoscopy Experiments (ermine) using Pyt...1 version - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 2 stars on GitHub - 1 maintainer
pycontact 1.0.4
PyContact2 versions - Latest release: over 3 years ago - 1 dependent repositories - 43 downloads last month - 42 stars on GitHub - 1 maintainer
pycellfit 0.2.3
Python implementation of the CellFIT method of inferring cellular forces5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
pybromo 0.8.1
Simulator for confocal single-molecule fluorescence experiments.5 versions - Latest release: almost 5 years ago - 2 dependent repositories - 24 downloads last month - 6 stars on GitHub - 1 maintainer
pensa 0.3.0
exploratory analysis and comparison of biomolecular conformational ensembles.13 versions - Latest release: 6 months ago - 1 dependent repositories - 118 downloads last month - 79 stars on GitHub - 1 maintainer
pdipy 0.0.5
Simulate Photodynamic Inactivation (PDI) of from a kinetics model of membrane oxidation.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 28 downloads last month - 1 stars on GitHub - 1 maintainer
osmolytes 1.3.0
This code attempts to predict the influence of osmolytes on protein stability6 versions - Latest release: over 3 years ago - 1 dependent repositories - 52 downloads last month - 1 stars on GitHub - 1 maintainer
old-pdb 2.0.0
This code reads and writes the old Protein Data Bank format.4 versions - Latest release: about 3 years ago - 1 dependent repositories - 51 downloads last month - 1 stars on GitHub - 1 maintainer
go2pdb 1.0.1
This code identifies Protein Data Bank (PDB) entries with specific Gene Ontology (GO) annotations.2 versions - Latest release: about 3 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 1 maintainer
deepdrivemd 0.0.2
Deep-Learning Driven Adaptive Molecular Simulations2 versions - Latest release: about 2 years ago - 1 dependent repositories - 24 downloads last month - 14 stars on GitHub - 2 maintainers
compactionanalyzer 1.0.2
A Python package to analyze tissue compaction around cells in fiber materials2 versions - Latest release: over 1 year ago - 23 downloads last month - 1 maintainer
blitzcurve 0.0.2
Time-resolved fluorescence anisotropy analysis.1 version - Latest release: about 6 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
pyagadir 1.0.0
A model of alpha-helical stability based on statistical mechanics.2 versions - Latest release: over 1 year ago - 21 downloads last month - 1 stars on GitHub - 1 maintainer
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 346 downloads last month - 7 stars on GitHub - 2 maintainers
fretbursts 0.7.1
Burst analysis toolkit for single and multi-spot smFRET data.20 versions - Latest release: over 1 year ago - 2 dependent repositories - 69 downloads last month - 11 stars on GitHub - 2 maintainers
palmiche 0.0.0a4
A python package for automation of MD simulations1 version - Latest release: over 1 year ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
proteuspy 0.95.5
proteusPy - Protein Structure Analysis and Modeling Tools41 versions - Latest release: 29 days ago - 213 downloads last month - 1 stars on GitHub - 1 maintainer
pdanalysis 0.0.4
Software for analysing deformation between protein structures.5 versions - Latest release: 6 months ago - 55 downloads last month - 21 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
12
chemistry
9
science
8
python
8
molecular-dynamics
6
analysis
5
biology
5
biochemistry
4
FRET
4
molecular-simulation
4
molecular-dynamics-simulation
3
trajectory-analysis
3
machine-learning
3
structural-biology
3
single-molecule
3
simulation
3
smFRET
3
computational-chemistry
2
microscopy
2
mdanalysis
2
structural
2
contractility
2
computational-biology
2
interactions
2
molecular
2
hacktoberfest
2
model
2
computational
2
protein
2
biomolecules
2
fluorescence
2
fret
2
structural-bioinformatics
2
microscopy-images
2
image-processing
2
napari-plugin
2
fluorescence-microscopy-imaging
2
neuroscience
2
tracking
1
antibacterial
1
photodynamic
1
medicine
1
PDI
1
antibiotics
1
llsm
1
workflow
1
complex-biological-systems
1
multi-scale-molecular-simulations
1
deep-learning
1
workflows
1
structure
1
compaction
1
refocus
1
simulator
1
brownian-motion
1
freely-diffusing
1
confocal
1
physics
1
forces
1
toolkit
1
qt5
1
molecular-structures
1
dynamics
1
scientific
1
dna
1
visualization
1
Photon-HDF5
1
numerical focusing
1
quantitative phase imaging
1
digital holographic microscopy
1
autofocusing
1
holography
1
numerical-focusing
1
quantitative-phase-imaging
1
burst-analysis
1
jupyter-notebook
1
spectroscopy
1
docking
1
drug-design
1
proteusPy
1
suchanek
1
disulfide
1
biological-data-analysis
1
fibrosis
1
lattice-light-sheet
1
rotation
1
curve
1
savitzky
1
golay
1
anisotropy
1
time
1
resolved
1
TRAM
1
single
1
molecule
1
image-analysis
1
alpha-helix
1
statistical mechanics
1
agadir
1
autofocus
1