pypi.org "biophysics" keyword
View the packages on the pypi.org package registry that are tagged with the "biophysics" keyword.
Top 1.7% on pypi.org
51 versions - Latest release: about 1 month ago - 34 dependent packages - 47 dependent repositories - 77.1 thousand downloads last month - 1,316 stars on GitHub - 4 maintainers
mdanalysis 2.9.0
An object-oriented toolkit to analyze molecular dynamics trajectories.51 versions - Latest release: about 1 month ago - 34 dependent packages - 47 dependent repositories - 77.1 thousand downloads last month - 1,316 stars on GitHub - 4 maintainers
fretbursts 0.8.3
Burst analysis toolkit for single and multi-spot smFRET data.24 versions - Latest release: 11 months ago - 2 dependent repositories - 3.88 thousand downloads last month - 14 stars on GitHub - 2 maintainers
jointforces 1.0.7
A Python package to conduct 3D Traction Force Microcopy on multicelluar aggregates (spheroids).8 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 349 downloads last month - 1 maintainer
solvation-analysis 0.4.1
A toolkit to analyze solvation structure in molecular dynamics trajectories.15 versions - Latest release: 9 months ago - 1 dependent repositories - 1.89 thousand downloads last month - 49 stars on GitHub - 1 maintainer
membrane-curvature 1.1.1
MDAnalysis tool to calculate membrane curvature from MD simulations.5 versions - Latest release: about 1 year ago - 1 dependent repositories - 294 downloads last month - 31 stars on GitHub - 2 maintainers
pdanalysis 0.0.4
Software for analysing deformation between protein structures.5 versions - Latest release: over 1 year ago - 198 downloads last month - 23 stars on GitHub - 1 maintainer
kif 0.4.1
Python package for MD simulation analysis10 versions - Latest release: 11 months ago - 267 downloads last month - 22 stars on GitHub - 1 maintainer
deerpredict 0.2.2
A package for DEER and PRE predictions based on molecular dynamics ensembles. Can be installed wi...13 versions - Latest release: 4 days ago - 1 dependent repositories - 505 downloads last month - 8 stars on GitHub - 1 maintainer
go2pdb 1.0.1
This code identifies Protein Data Bank (PDB) entries with specific Gene Ontology (GO) annotations.2 versions - Latest release: about 4 years ago - 1 dependent repositories - 101 downloads last month - 1 stars on GitHub - 1 maintainer
jaxley 0.8.2
Differentiable neuron simulations.15 versions - Latest release: 23 days ago - 1.15 thousand downloads last month - 88 stars on GitHub - 2 maintainers
pysawit 0.0.1
Oil Palm Growth and Yield Model1 version - Latest release: over 7 years ago - 1 dependent repositories - 34 downloads last month - 22 stars on GitHub - 1 maintainer
pycontact 1.0.4
PyContact2 versions - Latest release: over 4 years ago - 1 dependent repositories - 86 downloads last month - 42 stars on GitHub - 1 maintainer
bimato 2022.2.1
Bio Matrix Topology (BiMaTo) is a library containing all the biopolymer matrix topology analyses ...5 versions - Latest release: over 2 years ago - 177 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
98 versions - Latest release: 24 days ago - 3 dependent repositories - 3.49 thousand downloads last month - 195 stars on GitHub - 3 maintainers
deeptrack 2.0.1
A deep learning framework to enhance microscopy, developed by DeepTrackAI.98 versions - Latest release: 24 days ago - 3 dependent repositories - 3.49 thousand downloads last month - 195 stars on GitHub - 3 maintainers
aims-immune 0.9.2
A software for the analysis of immune repertoires16 versions - Latest release: about 1 year ago - 765 downloads last month - 9 stars on GitHub - 1 maintainer
pycapsid 0.5.9
A set of computational tools written in python for the analysis of viral capsids54 versions - Latest release: over 1 year ago - 1.2 thousand downloads last month - 5 stars on GitHub - 2 maintainers
proteuspy 0.99.34
proteusPy - Protein Structure Analysis and Modeling Tools80 versions - Latest release: 17 days ago - 533 downloads last month - 1 stars on GitHub - 1 maintainer
osmolytes 1.3.0
This code attempts to predict the influence of osmolytes on protein stability6 versions - Latest release: over 4 years ago - 1 dependent repositories - 181 downloads last month - 1 stars on GitHub - 1 maintainer
pyagadir 1.0.0
A model of alpha-helical stability based on statistical mechanics.2 versions - Latest release: over 2 years ago - 90 downloads last month - 2 stars on GitHub - 1 maintainer
kddg 0.29
Database APIs for managing mutageneses, macromolecular complexes, experimental measurements, and ...1 version - Latest release: over 1 year ago - 2 dependent repositories - 2 stars on GitHub - 1 maintainer
blitzcurve 0.0.2
Time-resolved fluorescence anisotropy analysis.1 version - Latest release: almost 7 years ago - 1 dependent repositories - 44 downloads last month - 0 stars on GitHub - 1 maintainer
domb-napari 2024.2.29
napari plugin for analyzing fluorescence-labeled proteins redistribution18 versions - Latest release: about 1 year ago - 359 downloads last month - 1 stars on GitHub - 1 maintainer
phconvert 0.9.1
Convert Beker&Hickl, PicoQuant and other formats to Photon-HDF5.19 versions - Latest release: 11 months ago - 1 dependent package - 6 dependent repositories - 349 downloads last month - 15 stars on GitHub - 2 maintainers
Top 5.0% on pypi.org
17 versions - Latest release: 4 months ago - 3 dependent packages - 8 dependent repositories - 189 thousand downloads last month - 137 stars on GitHub - 3 maintainers
pdb2pqr 3.7.1 💰
Automates many of the common tasks of preparing structures for continuum solvation calculations a...17 versions - Latest release: 4 months ago - 3 dependent packages - 8 dependent repositories - 189 thousand downloads last month - 137 stars on GitHub - 3 maintainers
memdof 0.1.3
A python package to determine the internal degrees of freedom for a single lipid membrane.1 version - Latest release: about 1 year ago - 31 downloads last month - 3 stars on GitHub - 1 maintainer
old-pdb 2.0.0
This code reads and writes the old Protein Data Bank format.4 versions - Latest release: about 4 years ago - 1 dependent repositories - 183 downloads last month - 2 stars on GitHub - 1 maintainer
pylattice 0.1.3
A python library for lattice light-sheet image analysis5 versions - Latest release: over 6 years ago - 1 dependent repositories - 251 downloads last month - 21 stars on GitHub - 1 maintainer
phic 2.1.0
Polymer dynamics simulation from Hi-C data15 versions - Latest release: 18 days ago - 1 dependent repositories - 161 downloads last month - 4 stars on GitHub - 1 maintainer
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 2 years ago - 2 dependent packages - 5 dependent repositories - 868 downloads last month - 8 stars on GitHub - 2 maintainers
odtbrain 0.4.11
Algorithms for diffraction tomography26 versions - Latest release: 19 days ago - 2 dependent repositories - 842 downloads last month - 45 stars on GitHub - 2 maintainers
pybromo 0.8.1
Simulator for confocal single-molecule fluorescence experiments.5 versions - Latest release: almost 6 years ago - 2 dependent repositories - 143 downloads last month - 6 stars on GitHub - 1 maintainer
pensa 0.6.0
exploratory analysis and comparison of biomolecular conformational ensembles.16 versions - Latest release: 3 months ago - 1 dependent repositories - 271 downloads last month - 80 stars on GitHub - 1 maintainer
palmiche 0.0.0a4
A python package for automation of MD simulations1 version - Latest release: over 2 years ago - 57 downloads last month - 0 stars on GitHub - 1 maintainer
pycellfit 0.2.3
Python implementation of the CellFIT method of inferring cellular forces5 versions - Latest release: over 4 years ago - 1 dependent repositories - 173 downloads last month - 0 stars on GitHub - 1 maintainer
molclustpy 0.1.0
A Python package to analyze multivalent biomolecular clustering.5 versions - Latest release: almost 2 years ago - 92 downloads last month - 0 stars on GitHub - 1 maintainer
hpsandbox 1.0.0b0
Python package to explore the 2D HP model of Chan and Dill.1 version - Latest release: almost 2 years ago - 59 downloads last month - 5 stars on GitHub - 1 maintainer
pyermine 0.1.2
Estimate Reaction-rates by Markov-based Investigation of Nanoscopy Experiments (ermine) using Pyt...1 version - Latest release: over 3 years ago - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 1 maintainer
compactionanalyzer 1.0.7
A python package to analyze matrix fiber alignment around cells (proxy for cellular forces)7 versions - Latest release: 3 months ago - 284 downloads last month - 1 maintainer
deepdrivemd 0.0.2
Deep-Learning Driven Adaptive Molecular Simulations2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 68 downloads last month - 16 stars on GitHub - 2 maintainers
mmcif-pdbx 2.0.1
Python utilities for PDBx/mmCIF storage model7 versions - Latest release: almost 4 years ago - 3 dependent packages - 3 dependent repositories - 123 thousand downloads last month - 6 stars on GitHub - 3 maintainers
biskit 3.0.0
A Python platform for structural bioinformatics6 versions - Latest release: about 1 month ago - 2 dependent repositories - 112 downloads last month - 56 stars on GitHub - 1 maintainer
polaritymodel 0.1.2
A package for running the cell polarity model3 versions - Latest release: almost 3 years ago - 119 downloads last month - 0 stars on GitHub - 1 maintainer
pdipy 0.0.5
Simulate Photodynamic Inactivation (PDI) of from a kinetics model of membrane oxidation.5 versions - Latest release: about 3 years ago - 1 dependent repositories - 102 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
12
chemistry
9
python
8
science
8
molecular-dynamics
6
analysis
5
molecular-simulation
4
biology
4
machine-learning
4
biochemistry
4
simulation
3
microscopy
3
smFRET
3
structural-biology
3
molecular-dynamics-simulation
3
trajectory-analysis
3
structural-bioinformatics
2
neuroscience
2
interactions
2
simulator
2
model
2
computational
2
protein
2
biomolecules
2
deep-learning
2
image-processing
2
hacktoberfest
2
FRET
2
computational-chemistry
2
single-molecule
2
single-molecule FRET
2
computational-biology
2
structural
2
fluorescence
2
fret
2
contractility
2
mdanalysis
2
diffraction
1
born
1
rytov
1
radon
1
backprojection
1
backpropagation
1
inverse problem
1
Fourier diffraction theorem
1
Fourier slice theorem
1
diffraction-tomography
1
single-cell-imaging
1
confocal
1
freely-diffusing
1
brownian-motion
1
image-analysis
1
lattice-light-sheet
1
llsm
1
tracking
1
genomics
1
Hi-C
1
polymer modeling
1
polymer dynamics
1
rheology
1
autofocus
1
refocus
1
numerical focusing
1
quantitative phase imaging
1
digital holographic microscopy
1
autofocusing
1
holography
1
numerical-focusing
1
quantitative-phase-imaging
1
odt
1
opt
1
phase-transition
1
rule-based-modeling
1
systems-biology
1
protein-folding
1
statistical-mechanics
1
hidden markov model
1
unsupervised learning
1
single particle tracking
1
structure
1
compaction
1
antibacterial
1
simulation-modeling
1
scientific
1
fibrosis
1
workflow
1
complex-biological-systems
1
multi-scale-molecular-simulations
1
workflows
1
docking
1
drug-design
1
forces
1
antibiotics
1
physics
1
BioNetGen
1
NumPy
1
Matplotlib
1
pandas
1
biomolecular-condensates
1
bionetgen
1