Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "gene-expression" keyword
shapeshifter-cli 1.0.0
A command-line tool for transforming large data sets4 versions - Latest release: about 5 years ago - 1 dependent repositories - 33 downloads last month - 2 stars on GitHub - 2 maintainers
tapir-rna 0.1.0
Transcriptional Analysis in Python Imported from R1 version - Latest release: over 1 year ago - 22 downloads last month - 2 stars on GitHub - 2 maintainers
shapeshifter 1.1.1
A tool for managing large datasets5 versions - Latest release: about 5 years ago - 1 dependent repositories - 61 downloads last month - 2 stars on GitHub - 2 maintainers
expressionable 1.2
A tool for managing large datasets3 versions - Latest release: about 5 years ago - 2 dependent repositories - 37 downloads last month - 2 stars on GitHub - 4 maintainers
Top 5.7% on pypi.org
10 versions - Latest release: over 3 years ago - 1 dependent package - 5 dependent repositories - 1.59 thousand downloads last month - 138 stars on GitHub - 2 maintainers
pymrmr 0.1.11
Python3 binding to mRMR Feature Selection algorithm10 versions - Latest release: over 3 years ago - 1 dependent package - 5 dependent repositories - 1.59 thousand downloads last month - 138 stars on GitHub - 2 maintainers
vintools 0.0.55
vintools - Michael Vinyard's utilities.23 versions - Latest release: over 2 years ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 2 maintainers
stanmf 0.2
python 2.7 implementation of stability NMF (Siqi Wu 2016)11 versions - Latest release: 9 months ago - 1 dependent repositories - 32 downloads last month - 6 stars on GitHub - 2 maintainers
celllayers 0.2.2
Cell Layers3 versions - Latest release: almost 2 years ago - 33 downloads last month - 4 stars on GitHub - 1 maintainer
spatialcorr 1.2.0
SpatialCorr3 versions - Latest release: over 1 year ago - 1 dependent repositories - 42 downloads last month - 9 stars on GitHub - 4 maintainers
sobolev-alignment 1.0.0
Sobolev alignment of deep probabilistic models for comparing single cell profiles1 version - Latest release: about 1 year ago - 23 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
enformer-pytorch 0.8.8 💰
Enformer - Pytorch99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
spatialcorr-sim 0.0.1
SpatialCorr2 versions - Latest release: over 2 years ago - 1 dependent repositories - 4 downloads last month - 3 stars on GitHub - 4 maintainers
pinetree 0.4.0
stochastic simulation of gene expression with site-specific translation rates8 versions - Latest release: over 1 year ago - 1 dependent repositories - 36 downloads last month - 9 stars on GitHub - 3 maintainers
Top 6.7% on pypi.org
9 versions - Latest release: over 1 year ago - 2 dependent packages - 9 dependent repositories - 1.7 thousand downloads last month - 220 stars on GitHub - 2 maintainers
tangram-sc 1.0.4
Spatial alignment of single cell transcriptomic data.9 versions - Latest release: over 1 year ago - 2 dependent packages - 9 dependent repositories - 1.7 thousand downloads last month - 220 stars on GitHub - 2 maintainers
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species1 version - Latest release: about 1 year ago - 14 downloads last month - 6 stars on GitHub - 2 maintainers
expressionable-cli 1.0.0
A command-line tool for transforming large data sets3 versions - Latest release: about 5 years ago - 1 dependent repositories - 28 downloads last month - 2 stars on GitHub - 4 maintainers
anoexpress 0.2.3
A package to access insecticide resistance gene expression meta analyse in Anopheles mosquitoes12 versions - Latest release: 4 months ago - 81 downloads last month - 2 stars on GitHub - 2 maintainers
eclair 1.18
Robust inference of cell lineages from gene expression data via consensus clustering and the aggr...7 versions - Latest release: about 8 years ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 2 maintainers
cello-classify 2.1.1
CellO7 versions - Latest release: 10 months ago - 2 dependent repositories - 71 downloads last month - 60 stars on GitHub - 2 maintainers
pyreqtl 0.4.0
A python library equivalent to R ReQTL Toolkit.1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 10 stars on GitHub - 2 maintainers
bio2bel-adeptus 0.0.1
Bio2BEL ADEPTUS.1 version - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
tf-bind-transformer 0.0.118 💰
Transformer for Transcription Factor Binding95 versions - Latest release: almost 2 years ago - 1 dependent repositories - 412 downloads last month - 76 stars on GitHub - 2 maintainers
ponyo 0.7.1
Install functions to simulate gene expression compendia9 versions - Latest release: almost 2 years ago - 4 dependent repositories - 52 downloads last month - 1 stars on GitHub - 2 maintainers
pathcore-t 1.0.2
Python 3 implementation of PathCORE-T analysis methods1 version - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 4 stars on GitHub - 2 maintainers
ggca 0.4.1
Computes efficiently the correlation (Pearson, Spearman or Kendall) and the p-value (two-sided) b...4 versions - Latest release: about 2 years ago - 1 dependent repositories - 1 downloads last month - 4 stars on GitHub - 2 maintainers
chromoformer 1.1.3
Chromoformer - Pytorch4 versions - Latest release: 9 months ago - 29 downloads last month - 27 stars on GitHub - 2 maintainers
tejaas 1.0.2
Command line tool for finding trans-eQTLs using reverse regression2 versions - Latest release: over 1 year ago - 1 dependent repositories - 7 downloads last month - 9 stars on GitHub - 2 maintainers
cimr 0.1.7
continuous integration of association summary statistics for network analysis2 versions - Latest release: about 4 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
computational-biology
6
bioinformatics
5
python
5
transcription
5
rna-seq
4
transcriptomics
4
single-cell
4
machine-learning
4
deep-learning
4
tsv
4
transforming-files
4
tabular-data
4
stata
4
salmon
4
pickle
4
arff
4
parquet
4
msgpack
4
merge
4
filter
4
kallisto
4
gct
4
hdf5
4
data-science
3
artificial intelligence
3
biology
3
artificial-intelligence
3
genomics
3
gene
3
clustering
3
scanpy
2
scrna-seq
2
variational-autoencoder
2
analysis
2
spatial-transcriptomics
2
microarray-data
2
json
2
transformer
2
attention-mechanism
2
gtex
2
recursion
1
snvs
1
gene expression
1
transcription factors
1
Biological Expression Language
1
transformers
1
attention mechanism
1
deep learning
1
pathology
1
Bio2BEL
1
biological-expression-language
1
differential-gene-expression
1
tree
1
tree-matching
1
unsupervised-learning
1
scRNA-seq
1
cell-type
1
cell-ontology
1
cell-biology
1
cell-type-classification
1
ontologies
1
single-cell-rna-seq
1
bioinformatics-analysis
1
bioinformatics-tool
1
matrixeqtl
1
numpy
1
pandas
1
python3
1
r
1
rna-seq-analysis
1
rpy2
1
scipy
1
twas
1
gwas
1
continuous-integration
1
ci
1
network
1
trans-eqtl
1
reverse-regression
1
eqtl-mapping
1
eqtl
1
reverse regression
1
trans-eQTL
1
eQTL
1
histone-modifications
1
gene expression prediction
1
epigenomics
1
rust
1
gene-expression-modulation
1
correlation-analysis
1
bioinformatic
1
p-value
1
correlation
1
modulation
1
expression
1
mRNA
1
supplement
1
methodology
1
software
1
neural-network
1