Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "dna-sequences" keyword
scadnano 0.19.4
Python scripting library for generating designs readable by scadnano.67 versions - Latest release: about 2 months ago - 1 dependent package - 3 dependent repositories - 230 downloads last month - 11 stars on GitHub - 2 maintainers
scadnano-test 0.17.1
Python scripting library for generating designs readable by scadnano.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 11 stars on GitHub - 1 maintainer
pymer 0.3.3
pymer: Pythonic fast k-mer counting routines13 versions - Latest release: about 7 years ago - 3 dependent repositories - 59 downloads last month - 0 stars on GitHub - 1 maintainer
sequenticon 0.1.5
Generate human-friendly icons from DNA sequences5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 300 downloads last month - 37 stars on GitHub - 1 maintainer
filter-classified-reads 0.2.1
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results3 versions - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 7 stars on GitHub - 1 maintainer
intervene 0.6.5
A tool for intersection and visualization of multiple gene or genomic region sets19 versions - Latest release: over 3 years ago - 1 dependent repositories - 156 downloads last month - 126 stars on GitHub - 1 maintainer
dnazip-bioinfo 0.2
A Python implementation of the Burros-Wheeler and Huffman coding algorithms2 versions - Latest release: about 3 years ago - 1 dependent repositories - 16 downloads last month - 4 stars on GitHub - 1 maintainer
graph-part 1.0.2
Graph-based partitioning of biological sequence data5 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 88 downloads last month - 19 stars on GitHub - 1 maintainer
convertfq 0.1.0
convertFQ is used to convert either DNA2RNA or RNA2DNA in a fastq file1 version - Latest release: almost 2 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 2 years ago - 1 dependent repositories - 411 downloads last month - 41 stars on GitHub - 1 maintainer
predsim 0.7.0
Command-line tool for simulating predictive datasets from MrBayes' output.9 versions - Latest release: almost 5 years ago - 1 dependent repositories - 88 downloads last month - 2 stars on GitHub - 1 maintainer
pacmill 0.6.1
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial ...7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
kspider2 2.0.1
kSpider Python interface2 versions - Latest release: about 3 years ago - 1 dependent repositories - 45 downloads last month - 7 stars on GitHub - 1 maintainer
kmergenerator 0.0.4
Get a kmer list given a single DNA or RNA sequence.4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 31 downloads last month - 2 stars on GitHub - 1 maintainer
crispr-cas9 0.3.4
script for indels counting in sequencing data6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 23 downloads last month - 4 stars on GitHub - 1 maintainer
crazydoc 0.1.6
Read genetic sequences from stylized docx files6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 3 thousand downloads last month - 31 stars on GitHub - 1 maintainer
haplodynamics 0.4b1
A python library to develop genomic data simulators16 versions - Latest release: 9 months ago - 34 downloads last month - 2 stars on GitHub - 1 maintainer
crest4 4.3.7
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained fr...32 versions - Latest release: 3 months ago - 1 dependent repositories - 86 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.0% on pypi.org
99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
enformer-pytorch 0.8.8 💰
Enformer - Pytorch99 versions - Latest release: 5 months ago - 1 dependent repositories - 902 downloads last month - 373 stars on GitHub - 1 maintainer
kspider 2.3.2
A simple yet powerful sequence clustering tool10 versions - Latest release: over 1 year ago - 1 dependent repositories - 210 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
17 versions - Latest release: over 4 years ago - 2 dependent packages - 2 dependent repositories - 180 downloads last month - 49 stars on GitHub - 1 maintainer
benchlingapi 2.1.12
An unofficial python wrapper for the Benchling API17 versions - Latest release: over 4 years ago - 2 dependent packages - 2 dependent repositories - 180 downloads last month - 49 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
6
dna
4
genomics
3
python
3
skipmers
2
taxonomic-classification
2
protein
2
clustering
2
synthetic-biology
2
simulation
2
16s-rrna
2
rna-seq
2
dna-structures
2
dna-origami
2
cadnano
2
python3
1
virology
1
dna-sequence
1
api-wrapper
1
ngs-analysis
1
deep-sequencing
1
crispr-cas9
1
NGS
1
sequencing
1
indels
1
rna-sequence
1
kmer-generator
1
iupac-convention
1
Biological-Sequences
1
DNA-Sequences
1
k-mers
1
pdf-reports
1
pacbio-data
1
bioinformatics-pipeline
1
seq-gen
1
posterior-predictive
1
mrbayes
1
molecular-evolution
1
deep-learning
1
attention-mechanism
1
artificial-intelligence
1
gene-expression
1
transformer
1
artificial intelligence
1
vcf-files
1
vcf
1
simulator
1
population-genomics
1
population-genetics
1
microarray-data
1
linkage-disequilibrium
1
hardy-weinberg-equilibrium
1
gwas-dataset
1
gwas
1
genomics-data
1
allele-frequencies
1
Hardy-Weinberg equilibrium
1
Linkage disequilibrium
1
VCF
1
SNP chip
1
Microarray
1
Genomic
1
Genomics
1
Simulator
1
molecular-biology
1
computer-aided-design
1
docx
1
systems-biology
1
protein-sequences
1
machine-learning
1
tkinter-gui
1
huffman
1
gui
1
data-structures
1
compression
1
bwt
1
burrows-wheeler-transform
1
algorithms
1
visualization
1
venn-diagram
1
pyton
1
intersection
1
heatmaps
1
genome-analysis
1
bedtools
1
filtering
1
bioinformatics-scripts
1
filter_classified_reads
1
sequence-editing
1
lims
1
hash
1
identicon
1
sequenticon
1
barcoding
1
sequence
1
DNA
1
kmer
1
dendropy
1
bayesian
1
Bayesian
1