Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genotyping" keyword
scalehd 1.1.1
Automated DNA micro-satellite genotyping.21 versions - Latest release: about 4 years ago - 1 dependent repositories - 63 downloads last month - 2 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
26 versions - Latest release: 21 days ago - 259 downloads last month - 0 stars on GitHub - 1 maintainer
digcnv 0.4.11
DigCNV: Discriminating True CNVs from artifacts from genotyping without further visualisation26 versions - Latest release: 21 days ago - 259 downloads last month - 0 stars on GitHub - 1 maintainer
genotype-variants 0.3.5
Project to genotype SNV, INDEL and SV.8 versions - Latest release: over 2 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
iscanvcfmerge 1.1
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes...2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
scalehd-alspac 0.3
Automated DNA micro-satellite genotyping.1 version - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
circle-map 1.1.4
Circular DNA analysis tools10 versions - Latest release: about 4 years ago - 1 dependent repositories - 118 downloads last month - 60 stars on GitHub - 1 maintainer
cellsnp 0.3.2
cellSNP - Analysis of expressed alleles in single cells14 versions - Latest release: almost 4 years ago - 1 dependent repositories - 97 downloads last month - 71 stars on GitHub - 2 maintainers
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 201 downloads last month - 51 stars on GitHub - 1 maintainer
sistr-cmd-olc 1.1.3
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen ...3 versions - Latest release: about 2 years ago - 1 dependent repositories - 18 downloads last month - 21 stars on GitHub - 1 maintainer
sistr-cmd 1.1.2
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen ...12 versions - Latest release: over 1 year ago - 5 dependent repositories - 122 downloads last month - 21 stars on GitHub - 2 maintainers
tblg 0.1.5
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file6 versions - Latest release: about 1 year ago - 16 downloads last month - 1 stars on GitHub - 1 maintainer
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: over 4 years ago - 1 dependent repositories - 123 downloads last month - 9 stars on GitHub - 1 maintainer
scalehdalspac 0.324.2
Automated DNA micro-satellite genotyping.4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
massgenotyping 0.2.2
Python package for microsatellite genotyping from amplicon sequencing data5 versions - Latest release: 5 months ago - 1 dependent repositories - 40 downloads last month - 7 stars on GitHub - 1 maintainer
indelpost 0.2.3
Python library for simple and complex indels20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 172 downloads last month - 11 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
machine-learning
3
huntington-disease
3
sistr
2
salmonella
2
cgmlst
2
MinHash
2
Mash
2
BLAST
2
cgMLST
2
serotyping
2
Salmonella
2
sequencing
2
genotype
2
illumina
2
python
2
quality control
1
cnv
1
barcoding
1
command-line
1
mycobacterium-tuberculosis
1
mycobacterium-tuberculosis-complex
1
Genotyping
1
Low
1
Coverage
1
data
1
1001genomes
1
arabidopsis
1
arageno
1
genotyping-by-sequencing
1
pipeline
1
snpmatch
1
snps
1
NGS
1
amplicon sequencing
1
microsatellite
1
amplicon-sequencing
1
next-generation-sequencing
1
indel
1
phasing
1
realignment
1
circrna-prediction
1
circrnas
1
circular-dna
1
eccdna
1
ecdna
1
microdna
1
ngs
1
structural-variation
1
allelic expression
1
single-cell RNA-seq
1
genetic-variants
1
rna-seq
1
single-cell
1
cyp2d6
1
adme
1
pgrnseq
1
getrm
1
allele
1
circrna
1
python3
1
microarray
1
iscan
1
msk-access
1
genotype_variants
1
machine learning
1