Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "illumina" keyword
methylcheck 0.8.5 💰
Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylatio...32 versions - Latest release: almost 2 years ago - 2 dependent packages - 1 dependent repositories - 225 downloads last month - 8 stars on GitHub - 1 maintainer
assnake 0.8.9
System for metagenomics data analysis8 versions - Latest release: about 4 years ago - 1 dependent repositories - 51 downloads last month - 11 stars on GitHub - 1 maintainer
sequali 0.8.0
Sequali is a QC tool that generates useful graphs for both short and long-read data.11 versions - Latest release: 7 days ago - 1.91 thousand downloads last month - 0 stars on GitHub - 1 maintainer
monte-barcode 0.0.2
Generating sets of random DNA sequences optimized for use in high-throughput sequencing.3 versions - Latest release: 12 months ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
vcfio 1.1.9
A simple and efficient VCF manipulation package.9 versions - Latest release: 3 months ago - 1 dependent repositories - 813 downloads last month - 6 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
19 versions - Latest release: almost 2 years ago - 5 dependent packages - 4 dependent repositories - 1.31 thousand downloads last month - 46 stars on GitHub - 1 maintainer
sample-sheet 0.13.0
An Illumina Sample Sheet parsing library19 versions - Latest release: almost 2 years ago - 5 dependent packages - 4 dependent repositories - 1.31 thousand downloads last month - 46 stars on GitHub - 1 maintainer
methylsuite 1.4.0 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 102 downloads last month - 31 stars on GitHub - 1 maintainer
methylize 1.1.1 💰
EWAS Analysis software for Illumina methylation arrays12 versions - Latest release: almost 2 years ago - 1 dependent repositories - 220 downloads last month - 12 stars on GitHub - 1 maintainer
iscanvcfmerge 1.1
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes...2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
gtmanipulator 0.2.7
Manipulates GenomeStudio processed Illumina iScan microarray data.6 versions - Latest release: almost 7 years ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
Top 6.1% on pypi.org
42 versions - Latest release: 7 months ago - 1 dependent package - 17 dependent repositories - 3.1 thousand downloads last month - 28 stars on GitHub - 5 maintainers
genologics 1.0.0
Python interface to the Illumina Basespace Clarity LIMS (Laboratory Information Management System...42 versions - Latest release: 7 months ago - 1 dependent package - 17 dependent repositories - 3.1 thousand downloads last month - 28 stars on GitHub - 5 maintainers
genologics_sql 0.0.2
Python interface to the Illumina Clarity LIMS (Laboratory Information Management System) (formerl...2 versions - Latest release: over 6 years ago - 3 dependent repositories - 15 downloads last month - 1 stars on GitHub - 1 maintainer
checkqc 4.0.2
A simple program to parse Illumina NGS data and check it for quality criteria.37 versions - Latest release: 23 days ago - 1 dependent repositories - 504 downloads last month - 24 stars on GitHub - 3 maintainers
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...18 versions - Latest release: over 1 year ago - 1 dependent repositories - 182 downloads last month - 47 stars on GitHub - 1 maintainer
varvamp 1.2.0
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses22 versions - Latest release: 8 days ago - 334 downloads last month - 19 stars on GitHub - 1 maintainer
ampligone 1.3.1
Ampligone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon...9 versions - Latest release: about 1 month ago - 65 downloads last month - 8 stars on GitHub - 3 maintainers
methylprep 1.7.1 💰
Python-based Illumina methylation array preprocessing software54 versions - Latest release: almost 2 years ago - 2 dependent repositories - 902 downloads last month - 32 stars on GitHub - 1 maintainer
methpype 1.0.6 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 32 stars on GitHub - 1 maintainer
s4-clarity 1.5.0
A general purpose library for interacting with Clarity LIMS10 versions - Latest release: 10 months ago - 1 dependent repositories - 303 downloads last month - 16 stars on GitHub - 1 maintainer
Related Keywords
dna
6
data
6
bioinformatics
6
methylation
5
processing
5
epigenetics
5
python
4
sequencing
4
genologics
3
clarity
3
lims
3
ngs
3
analysis
2
nanopore
2
pcr
2
python3
2
microarray
2
genotyping
2
qpcr
1
getrm
1
pgrnseq
1
adme
1
cyp2d6
1
amplicon-sequencing
1
quality-control
1
genomics
1
quality control
1
postgres
1
database
1
ngs-analysis
1
rivm
1
basespace
1
rest
1
pypi-package
1
primer-design
1
primer-blast
1
primer
1
sanger
1
oxford-nanopore
1
multiplex-pcr
1
easy-to-use
1
degenerate-primers
1
container
1
virus
1
consensus-sequences
1
conda
1
ampliconseq
1
amplicons
1
genotype
1
allele
1
api
1
molecular-biology
1
barcode-generator
1
barcode
1
assay
1
science
1
barcodes
1
QC
1
uBAM
1
sequencing quality
1
FASTQ
1
snakemake
1
metagenomics-data
1
metagenomics
1
DATA
1
METAGENOMIC
1
NGS
1
ILLUMINA
1
iScan
1
Illumina
1
alleles
1
iscan
1
biology
1
parallelization
1
life
1
experiment-manager
1
demultiplexing
1
parser
1
sheet
1
sample
1
samplesheet
1
emedgene
1
genetics
1
variant
1
vcf
1