pypi.org "illumina" keyword
View the packages on the pypi.org package registry that are tagged with the "illumina" keyword.
genologics_sql 0.0.2
Python interface to the Illumina Clarity LIMS (Laboratory Information Management System) (formerl...2 versions - Latest release: over 7 years ago - 3 dependent repositories - 30 downloads last month - 1 stars on GitHub - 1 maintainer
methpype 1.0.6 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: over 4 years ago - 1 dependent repositories - 224 downloads last month - 36 stars on GitHub - 1 maintainer
pylluminator 0.1
Tool to preprocess, analyze and visualize DNA methylation data from Illumina micro-arrays1 version - Latest release: about 1 month ago - 145 downloads last month - 2 stars on GitHub - 1 maintainer
varvamp 1.2.2
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses24 versions - Latest release: 2 months ago - 843 downloads last month - 36 stars on GitHub - 1 maintainer
checkqc 4.0.5
A simple program to parse Illumina NGS data and check it for quality criteria.39 versions - Latest release: 7 months ago - 1 dependent repositories - 3.59 thousand downloads last month - 24 stars on GitHub - 3 maintainers
mepylome 0.8.10
Python package for processing Infinum DNA methylation arrays45 versions - Latest release: 6 days ago - 1.78 thousand downloads last month - 5 stars on GitHub - 1 maintainer
ampligone 2.0.1
AmpliGone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon...11 versions - Latest release: 18 days ago - 437 downloads last month - 16 stars on GitHub - 3 maintainers
methylprep 1.7.1 💰
Python-based Illumina methylation array preprocessing software54 versions - Latest release: over 2 years ago - 2 dependent repositories - 1.63 thousand downloads last month - 36 stars on GitHub - 1 maintainer
assnake 0.8.9
System for metagenomics data analysis8 versions - Latest release: about 5 years ago - 1 dependent repositories - 204 downloads last month - 11 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
19 versions - Latest release: over 2 years ago - 5 dependent packages - 4 dependent repositories - 3.66 thousand downloads last month - 50 stars on GitHub - 1 maintainer
sample-sheet 0.13.0
An Illumina Sample Sheet parsing library19 versions - Latest release: over 2 years ago - 5 dependent packages - 4 dependent repositories - 3.66 thousand downloads last month - 50 stars on GitHub - 1 maintainer
sequali 0.12.0
Sequali is a QC tool that generates useful graphs for both short and long-read data.17 versions - Latest release: 6 months ago - 5.04 thousand downloads last month - 0 stars on GitHub - 1 maintainer
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...20 versions - Latest release: over 2 years ago - 1 dependent repositories - 790 downloads last month - 55 stars on GitHub - 1 maintainer
methylize 1.1.1 💰
EWAS Analysis software for Illumina methylation arrays12 versions - Latest release: almost 3 years ago - 1 dependent repositories - 477 downloads last month - 16 stars on GitHub - 1 maintainer
iscanvcfmerge 1.1
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes...2 versions - Latest release: over 3 years ago - 1 dependent repositories - 94 downloads last month - 0 stars on GitHub - 1 maintainer
s4-clarity 1.7.0
A general purpose library for interacting with Clarity LIMS13 versions - Latest release: about 1 month ago - 1 dependent repositories - 983 downloads last month - 15 stars on GitHub - 1 maintainer
pacu-snp 0.0.7
Workflow for whole genome sequencing based phylogeny of Illumina and ONT data.6 versions - Latest release: 3 months ago - 210 downloads last month - 5 stars on GitHub - 1 maintainer
methylcheck 0.8.5 💰
Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylatio...32 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 939 downloads last month - 11 stars on GitHub - 1 maintainer
gtmanipulator 0.2.7
Manipulates GenomeStudio processed Illumina iScan microarray data.6 versions - Latest release: over 7 years ago - 1 dependent repositories - 109 downloads last month - 1 maintainer
monte-barcode 0.0.3
Generating sets of random DNA sequences optimized for use in high-throughput sequencing.4 versions - Latest release: about 2 months ago - 243 downloads last month - 0 stars on GitHub - 1 maintainer
vcfio 1.1.9
A simple and efficient VCF manipulation package.11 versions - Latest release: about 1 year ago - 1 dependent repositories - 643 downloads last month - 6 stars on GitHub - 1 maintainer
methylsuite 1.4.0 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 255 downloads last month - 36 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
43 versions - Latest release: 8 months ago - 1 dependent package - 17 dependent repositories - 3.23 thousand downloads last month - 29 stars on GitHub - 5 maintainers
genologics 2.0.1
Python interface to the Illumina Basespace Clarity LIMS (Laboratory Information Management System...43 versions - Latest release: 8 months ago - 1 dependent package - 17 dependent repositories - 3.23 thousand downloads last month - 29 stars on GitHub - 5 maintainers
Related Keywords
methylation
7
epigenetics
7
bioinformatics
7
dna
6
data
6
python
5
sequencing
5
processing
5
nanopore
3
ngs
3
microarray
3
lims
3
clarity
3
genologics
3
Illumina
2
analysis
2
genotyping
2
python3
2
pcr
2
pgrnseq
1
getrm
1
adme
1
cyp2d6
1
QC
1
uBAM
1
sequencing quality
1
FASTQ
1
experiment-manager
1
demultiplexing
1
parser
1
sheet
1
sample
1
samplesheet
1
snakemake
1
metagenomics-data
1
metagenomics
1
DATA
1
rest
1
api
1
emedgene
1
genetics
1
variant
1
vcf
1
molecular-biology
1
barcode-generator
1
barcode
1
biotechnology
1
assay
1
science
1
barcodes
1
iScan
1
alleles
1
phylogeny
1
basespace
1
iscan
1
biology
1
parallelization
1
life
1
genotype
1
allele
1
METAGENOMIC
1
virus
1
sanger
1
qpcr
1
pypi-package
1
primer-design
1
primer-blast
1
primer
1
oxford-nanopore
1
multiplex-pcr
1
easy-to-use
1
degenerate-primers
1
container
1
consensus-sequences
1
conda
1
ampliconseq
1
amplicons
1
microarray-data-analysis
1
DMR
1
dna-methylation
1
postgres
1
database
1
NGS
1
ILLUMINA
1
rivm
1
ngs-analysis
1
amplicon-sequencing
1
umap
1
tumor-classification
1
minfi
1
methylation-plot
1
methylation-microarrays
1
methylation-extractor
1
methylation-analysis
1
conumee
1
cnv
1
BeadChip
1
Microarray
1
Infinum
1
Methylation
1