Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genotype" keyword
the-real-genotools 1.2.2
A collection of tools for genotype quality control and analysis5 versions - Latest release: about 1 month ago - 68 downloads last month - 19 stars on GitHub - 1 maintainer
magenpy 0.1.1
Modeling and Analysis of Statistical Genetics data in python15 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.07 thousand downloads last month - 16 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
4 versions - Latest release: over 4 years ago - 3 dependent repositories - 276 downloads last month - 116 stars on GitHub - 3 maintainers
svtyper 0.7.1
Bayesian genotyper for structural variants4 versions - Latest release: over 4 years ago - 3 dependent repositories - 276 downloads last month - 116 stars on GitHub - 3 maintainers
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 201 downloads last month - 51 stars on GitHub - 1 maintainer
hpo3 1.2.0
A Python package to work with the HPO Ontology using a Rust backend for faster performance13 versions - Latest release: about 2 months ago - 1 dependent package - 4.44 thousand downloads last month - 5 stars on GitHub - 1 maintainer
gennet-forked 2.0.0
Framework for Interpretable Neural Networks2 versions - Latest release: 16 days ago - 1 dependent package - 227 downloads last month - 84 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
bed-reader 1.0.4
Read and write the PLINK BED format, simply and efficiently.33 versions - Latest release: 27 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
unvcf 0.1.2
Split VCF file into intelligible tab-delimited files3 versions - Latest release: over 6 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
sv2 1.4.3
SV2: Support Vector Structural Variation Genotyper10 versions - Latest release: about 6 years ago - 1 dependent repositories - 202 downloads last month - 57 stars on GitHub - 1 maintainer
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: over 4 years ago - 1 dependent repositories - 123 downloads last month - 9 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
27 versions - Latest release: almost 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
peddy 0.4.8 💰
pleasingly pythonic pedigree manipulation27 versions - Latest release: almost 3 years ago - 7 dependent repositories - 1.69 thousand downloads last month - 127 stars on GitHub - 1 maintainer
patientmatcher 3.1.2
A python and MongoDB-based Matchmaker Exchange server24 versions - Latest release: over 2 years ago - 1 dependent repositories - 129 downloads last month - 11 stars on GitHub - 3 maintainers
Top 4.8% on pypi.org
56 versions - Latest release: almost 3 years ago - 7 dependent packages - 22 dependent repositories - 5.87 thousand downloads last month - 75 stars on GitHub - 1 maintainer
pandas-plink 2.2.9
Read PLINK files into Pandas data frames56 versions - Latest release: almost 3 years ago - 7 dependent packages - 22 dependent repositories - 5.87 thousand downloads last month - 75 stars on GitHub - 1 maintainer
genonets 1.1.10
Framework for creating and analyzing genotype networks from.27 versions - Latest release: over 3 years ago - 2 dependent repositories - 248 downloads last month - 4 stars on GitHub - 1 maintainer
pypgx 0.24.0 💰
A Python package for pharmacogenomics (PGx) research22 versions - Latest release: about 2 months ago - 1 dependent repositories - 376 downloads last month - 56 stars on GitHub - 1 maintainer
mgatk 0.7.0
Mitochondrial genome analysis toolkit.21 versions - Latest release: 4 months ago - 1 dependent repositories - 99 downloads last month - 90 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
lineage 4.4.0
tools for genetic genealogy and the analysis of consumer DNA test results31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
camlhmp 0.1.0
Classification through yAML Heuristic Mapping Protocol2 versions - Latest release: 22 days ago - 279 downloads last month - 1 stars on GitHub - 1 maintainer
varapp-backend-py 1.0.1.1
Genomic variants explorer2 versions - Latest release: 9 months ago - 3 dependent repositories - 12 downloads last month - 20 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.11
PySnpTools47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
genotype 3.0.0
genotype provides an automated pipipeline for comparinggenotypes from different assays.9 versions - Latest release: over 3 years ago - 1 dependent package - 2 dependent repositories - 85 downloads last month - 8 stars on GitHub - 3 maintainers
pyhpo 3.3.0
A Python package to work with the HPO Ontology20 versions - Latest release: about 2 months ago - 1 dependent package - 2 dependent repositories - 566 downloads last month - 20 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
10
phenotype
6
genomics
6
snps
4
plink
3
genetics
3
rare diseases
3
variants
2
reader
2
ancestry
2
sequencing
2
hpo
2
bed-format
2
file-format
2
machine-learning
2
genotyping-by-sequencing
2
structural-variation
2
genes
2
genotyping
2
cyp2d6
2
vcf
2
python
2
hpo-similarity
2
gwas
2
matchmaking
1
pharmacogenomics
1
pharmacogenetics
1
pgx
1
cli
1
api
1
network
1
matchmaking-server
1
genonets
1
omim
1
patient-matching
1
score
1
similarity-score
1
ontology
1
development
1
writer
1
regions
1
ranges
1
intervals
1
sets
1
gemini
1
filter
1
serotype
1
bacteria
1
chromosomes
1
genealogy
1
dna
1
single-cell
1
r
1
python3
1
mitochondrial
1
epigenetics
1
star-alleles
1
matching-algorithm
1
variant call
1
vcf file
1
neural-networks
1
neural-network
1
interpretable-neural-networks
1
gennet
1
deep-learning
1
allele
1
getrm
1
pgrnseq
1
illumina
1
adme
1
simulation
1
prs
1
linkage-disequilibrium
1
ldsc
1
quality-control
1
ancestry-estimation
1
gene
1
diagnosis
1
genetic disease
1
patients
1
matchmaker
1
matchmaker exchange
1
pedigree
1
snpmatch
1
pipeline
1
arageno
1
arabidopsis
1
1001genomes
1
data
1
Coverage
1
Low
1
Genotyping
1
de-novo-mutation
1
converter
1