Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "gwas" keyword
gwaspy 0.1.1
GWASpy: A Python package for performing GWAS QC, PCA, phasing, and genotype imputation.2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 17 downloads last month - 15 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
8 versions - Latest release: 20 days ago - 2 dependent packages - 5 dependent repositories - 1.37 thousand downloads last month - 213 stars on GitHub - 1 maintainer
sgkit 0.8.0
Statistical genetics toolkit8 versions - Latest release: 20 days ago - 2 dependent packages - 5 dependent repositories - 1.37 thousand downloads last month - 213 stars on GitHub - 1 maintainer
eqtlseq 17.5.28
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 5 stars on GitHub - 1 maintainer
dak 0.0.1
Explaining the genetic causality for complex diseases by deep association kernel learning1 version - Latest release: about 4 years ago - 1 dependent repositories - 24 downloads last month - 14 stars on GitHub - 1 maintainer
unitig-caller 1.2.0
unitig-caller: wrapper around mantis to detect presence of sequence elements3 versions - Latest release: about 3 years ago - 1 dependent repositories - 24 downloads last month - 16 stars on GitHub - 1 maintainer
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 47 downloads last month - 925 stars on GitHub - 2 maintainers
pysumstats 0.5.2
Package for working with GWAS summary statistics20 versions - Latest release: over 3 years ago - 1 dependent repositories - 152 downloads last month - 0 stars on GitHub - 1 maintainer
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.6 versions - Latest release: about 2 years ago - 1 dependent repositories - 36 downloads last month - 925 stars on GitHub - 2 maintainers
easyfinemap 0.4.6
user-friendly pipeline for GWAS fine-mapping.24 versions - Latest release: about 1 month ago - 273 downloads last month - 1 stars on GitHub - 1 maintainer
variant-spark 0.5.2
VariantSpark Python API36 versions - Latest release: over 1 year ago - 1 dependent repositories - 263 downloads last month - 138 stars on GitHub - 3 maintainers
genetest 0.6.0
A package to process and analyze genotypic and phenotypic data.8 versions - Latest release: over 2 years ago - 1 dependent repositories - 92 downloads last month - 3 stars on GitHub - 1 maintainer
genepi 2.0.10
A package for detecting epsitasis by machine learning13 versions - Latest release: almost 4 years ago - 1 dependent repositories - 82 downloads last month - 20 stars on GitHub - 1 maintainer
scdrs 1.0.2
Single-cell disease-relevance score2 versions - Latest release: over 1 year ago - 1 dependent package - 94 downloads last month - 92 stars on GitHub - 1 maintainer
magenpy 0.1.1
Modeling and Analysis of Statistical Genetics data in python14 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.48 thousand downloads last month - 15 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
hail 0.2.130
Scalable library for exploring and analyzing genomic data.150 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 40.5 thousand downloads last month - 925 stars on GitHub - 2 maintainers
fastlmmclib 0.0.3
Fast GWAS C library3 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 810 downloads last month - 0 stars on GitHub - 1 maintainer
knockofforigins 0.1.4
This repository is dedicated to implementing the methodologies from the 2015 paper "False Discove...5 versions - Latest release: 9 days ago - 1.15 thousand downloads last month - 0 stars on GitHub - 1 maintainer
nonlinear-causal 1.0
nonlinear-causal is a Python module for nonlinear causal inference built on top of Two-stage IV m...4 versions - Latest release: 4 months ago - 11 downloads last month - 12 stars on GitHub - 1 maintainer
jupyter-locuszoom 0.1.1.dev0 💰
Jupyter Widget for LocusZoom2 versions - Latest release: 11 months ago - 23 downloads last month - 4 stars on GitHub - 1 maintainer
pyicare 1.0.0
A Python distribution of iCARE, a tool for individualized Coherent Absolute Risk Estimation.1 version - Latest release: 12 months ago - 35 downloads last month - 1 stars on GitHub - 1 maintainer
panfeed 1.5.1
Compute gene-cluster specific k-mers over a pangenome8 versions - Latest release: 10 months ago - 1 dependent repositories - 60 downloads last month - 8 stars on GitHub - 1 maintainer
haptools 0.4.0
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis9 versions - Latest release: 4 months ago - 1 dependent repositories - 113 downloads last month - 14 stars on GitHub - 2 maintainers
zorp 0.3.8
ZORP: A helpful GWAS parser12 versions - Latest release: almost 2 years ago - 2 dependent repositories - 241 downloads last month - 1 stars on GitHub - 1 maintainer
vs-emr 0.2.0a2
VariantSpark AWS EMR Tool2 versions - Latest release: over 5 years ago - 1 dependent repositories - 12 downloads last month - 1 maintainer
struct-lmm 0.3.2
Linear mixed model to study multivariate genotype-environment interactions32 versions - Latest release: over 3 years ago - 1 dependent repositories - 164 downloads last month - 12 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
16 versions - Latest release: over 6 years ago - 2 dependent repositories - 162 downloads last month - 137 stars on GitHub - 1 maintainer
scoary 1.6.16
Microbial pan-GWAS using the output from Roary16 versions - Latest release: over 6 years ago - 2 dependent repositories - 162 downloads last month - 137 stars on GitHub - 1 maintainer
pac-tool 1.0.6a
This is our little project for GWAS1 version - Latest release: about 7 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 1 maintainer
pactool 1.1.1
This is our little project for GWAS27 versions - Latest release: about 7 years ago - 1 dependent repositories - 117 downloads last month - 3 stars on GitHub - 1 maintainer
leap_gwas 0.1.8
Liability Estimation in Case Control Studies25 versions - Latest release: almost 9 years ago - 2 dependent repositories - 67 downloads last month - 9 stars on GitHub - 1 maintainer
gwas_wrapper 0.1
Python wrapper for interacting with the NHGRI-EBI GWAS Catalog1 version - Latest release: about 8 years ago - 2 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
gwas_benchmark 0.1.3
GWAS benchmark4 versions - Latest release: over 8 years ago - 26 downloads last month - 4 maintainers
Top 8.2% on pypi.org
52 versions - Latest release: 20 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
fastlmm 0.6.8
Fast GWAS52 versions - Latest release: 20 days ago - 1 dependent package - 7 dependent repositories - 680 downloads last month - 43 stars on GitHub - 4 maintainers
easyae-samuel.revolinski 0.0.0
easy way for non-linear dimensionality increase or reduction1 version - Latest release: over 5 years ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
easyae 0.0.0
easy way for non-linear dimensionality increase or reduction1 version - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
tstrait 0.1.0
Quantitative trait simulation of tree sequence data5 versions - Latest release: 2 months ago - 1 dependent repositories - 56 downloads last month - 4 stars on GitHub - 2 maintainers
cimr 0.1.7
continuous integration of association summary statistics for network analysis2 versions - Latest release: about 4 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 1 maintainer
haplodynamics 0.4b1
A python library to develop genomic data simulators16 versions - Latest release: 9 months ago - 34 downloads last month - 2 stars on GitHub - 1 maintainer
pygwasvcf 0.0.4
A package for reading GWAS summary statistics stored in VCF/BCF format1 version - Latest release: about 2 years ago - 1 dependent repositories - 33 downloads last month - 6 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.11
PySnpTools47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
ardiss 0.1.3
Automated Relevance Determination for Imputation of GWAS Summary Statistics3 versions - Latest release: over 5 years ago - 23 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.2% on pypi.org
22 versions - Latest release: 5 months ago - 3 dependent packages - 1 dependent repositories - 1.36 thousand downloads last month - 30 stars on GitHub - 1 maintainer
qmplot 0.3.3
qmplot: Create high-quality manhattan and QQ plots for PLINK association output (or any dataframe...22 versions - Latest release: 5 months ago - 3 dependent packages - 1 dependent repositories - 1.36 thousand downloads last month - 30 stars on GitHub - 1 maintainer
viprs 0.1.1
Variational Inference of Polygenic Risk Scores (VIPRS)6 versions - Latest release: 26 days ago - 930 downloads last month - 15 stars on GitHub - 1 maintainer
pandasgwas 1.2.2
A Python package for easy retrieval of GWAS Catalog data17 versions - Latest release: about 2 months ago - 118 downloads last month - 6 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
14
genomics
13
python
12
genetics
11
vcf
7
simulation
4
hail
3
software
3
nonlinear
3
dimensionality-reduction
3
summary-statistics
3
MLMs
3
LMMs
3
machine-learning
3
linear
2
mixed
2
models
2
prs
2
genotype
2
genome-wide-association-studies
2
locuszoom
2
GWAS
2
variant-spark
2
random-forest
2
association-studies
2
unsupervised-machine-learning
2
unsupervised-learning
2
unsupervised-clustering
2
unsupervised
2
spectral-clustering
2
spectral-analysis
2
population-structure
2
nir
2
machine-learning-algorithms
2
keras
2
autoencoders
2
autoencoder
2
auto-encoders
2
auto-encoder
2
gwas-catalog
2
snp
2
bioinfo-grad
2
linux
2
project
2
gwas-tools
2
plink
2
association
2
imputation
2
bacteria
2
statistics
2
gwas-summary-statistics
2
quantitative trait
1
statistical genetics
1
tree sequence
1
tskit
1
args
1
tree-sequences
1
gene
1
network
1
ci
1
continuous-integration
1
gene-expression
1
gtex
1
twas
1
Simulator
1
Genomics
1
studies
1
snp-associations
1
benchmarks
1
rna-seq-data-transformation
1
rna-seq
1
eqtl
1
RNA-seq
1
Bayesian
1
eQTL
1
statistical-genetics
1
statgen
1
pydata
1
popgen
1
qc
1
phasing
1
pca
1
population genetics
1
library
1
sets
1
intervals
1
ranges
1
regions
1
file-format
1
reader
1
bed-format
1
writer
1
snps
1
genomics-data-visualization
1
matplotlib
1
visualization
1
medicine
1
polygenic-risk-scores
1
variational-inference
1
pandas
1